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exercises:2015_ethz_mmm:index [2015/02/06 18:05] oschuettexercises:2015_ethz_mmm:index [2016/02/03 10:07] oschuett
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 ====== Exercises ====== ====== Exercises ======
  
-The following exercises are part of the the course [[http://www.vvz.ethz.ch/Vorlesungsverzeichnis/lerneinheitPre.do?lerneinheitId=97794&semkez=2015S | Molecular and Materials Modelling]] held at ETH Zürich during the spring semester 2015+The following exercises are part of the the course [[ http://www.vvz.ethz.ch/Vorlesungsverzeichnis/lerneinheitPre.do?lerneinheitId=105400&semkez=2016S | Molecular and Materials Modelling]] held at ETH Zürich during the spring semester 2016
  
  
-===== Lecture 1 =====+===== Lecture 1 (tentative) =====
   - [[single_point_calculation|Single Point Energy Calculation]]   - [[single_point_calculation|Single Point Energy Calculation]]
   - [[geometry_optimization|Geometry Optimization]]   - [[geometry_optimization|Geometry Optimization]]
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 ===== Lecture 6 (tentative) ===== ===== Lecture 6 (tentative) =====
 +  - [[exercises:2015_ethz_mmm:monte_carlo_ice|Properties of Ice from Monte Carlo Simulations]]
 +  - [[nacl_md | Observer NaCl dissociation in water ]]
 +  - [[nacl_free_energy | Free Energy Profile of NaCl Dissociation ]]
 +
 +===== Lecture 7 (tentative) =====
   - [[basis_sets|Basis Sets]]   - [[basis_sets|Basis Sets]]
   - [[reaction_energy|Reaction Energy]]   - [[reaction_energy|Reaction Energy]]
   - [[mo_ethene|Molecular orbitals of Ethene]]   - [[mo_ethene|Molecular orbitals of Ethene]]
  
-===== Lecture (tentative) =====+===== Lecture (tentative) =====
   - [[dye_tio|Dye anchoring to TiO$_2$]]   - [[dye_tio|Dye anchoring to TiO$_2$]]
  
-===== Lecture (tentative) =====+===== Lecture (tentative) =====
   - [[hfx_h2ion|Hartree-Fock exchange for the dihydrogen cation]]   - [[hfx_h2ion|Hartree-Fock exchange for the dihydrogen cation]]
   - [[tio2_gap|TiO$_2$ Band Gap as a function of %hfx]]   - [[tio2_gap|TiO$_2$ Band Gap as a function of %hfx]]
   - [[benzene_dimer|Binding Energy of the Benzene Dimer]]   - [[benzene_dimer|Binding Energy of the Benzene Dimer]]
- 
-===== Lecture 9 (tentative) ===== 
-  - [[ls_scf| Linear scaling SCF]] 
-  - [[wannier | Maximally Localized Wannier Functions]] 
  
 ===== Lecture 10 (tentative) ===== ===== Lecture 10 (tentative) =====
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 ===== Lecture 11 (tentative) ===== ===== Lecture 11 (tentative) =====
 +  - [[ls_scf| Linear scaling SCF]]
 +  - [[wannier | Maximally Localized Wannier Functions]]
 +
 +===== Additional bonus exercises (tentative) =====
   - [[UV | UV absorption spectroscopy of water ]]   - [[UV | UV absorption spectroscopy of water ]]
   - [[bs | band structure and DOS of graphene ]]   - [[bs | band structure and DOS of graphene ]]
  
-===== Lecture 12 (tentative) ===== +====== Euler Cheat Sheet ====== 
-  [[monte_carlo_ice Properties of Ice from Monte Carlo Simulations ]]+For more information have a look at the [[http://www.clusterwiki.ethz.ch/brutus/Getting_started_with_Euler cluster-wiki]].
  
-===== Lecture 13 (tentative) ===== 
-  - [[nacl_md | Observer NaCl dissociation in water ]] 
-  - [[nacl_free_energy | Free Energy Profile of NaCl Dissociation ]] 
- 
-====== Brutus Cheat Sheet ====== 
 <code> <code>
-you@brutusX ~$ module load new cp2k/trunk.13711 +you@eulerX ~$ module load new cp2k vmd 
-you@brutusX ~$ bsub -n 1 mpirun cp2k.popt -i energy.inp -o energy.out +you@eulerX ~$ bsub -n 1 mpirun cp2k.popt -i energy.inp -o energy.out 
-you@brutusX ~$ bjobs+you@eulerX ~$ bjobs
 JOBID      USER    STAT  QUEUE      FROM_HOST   EXEC_HOST   JOB_NAME   SUBMIT_TIME JOBID      USER    STAT  QUEUE      FROM_HOST   EXEC_HOST   JOB_NAME   SUBMIT_TIME
-52338697   you     RUN   pub.1h     brutus1     a9042       *-o O2.out Mar 27 16:00 +2955028    you     PEND  beta.4h    euler02                 *nergy.out Feb 12 14:21 
-you@brutusX ~$ bkill 52338697 +you@eulerX ~$ bkill 2955028 
-Job <52338697> is being terminated+Job <2955028> is being terminated
 </code> </code>
  
-<note tip>Connecting to Brutus from a Windows machine: install+<note tip>Connecting to Euler from a Windows machine: install
   * putty [[http://the.earth.li/~sgtatham/putty/latest/x86/putty.exe]]   * putty [[http://the.earth.li/~sgtatham/putty/latest/x86/putty.exe]]
   * xming [[http://sourceforge.net/projects/xming/files/latest/download]]   * xming [[http://sourceforge.net/projects/xming/files/latest/download]]
   * winscp [[http://winscp.net/download/winscp551setup.exe]]   * winscp [[http://winscp.net/download/winscp551setup.exe]]
 </note> </note>
 +
 +
exercises/2015_ethz_mmm/index.txt · Last modified: 2020/08/21 10:15 by 127.0.0.1