LCOV - code coverage report
Current view: top level - src/motion/mc - mc_types.F (source / functions) Hit Total Coverage
Test: CP2K Regtests (git:262480d) Lines: 786 859 91.5 %
Date: 2024-11-22 07:00:40 Functions: 14 24 58.3 %

          Line data    Source code
       1             : !--------------------------------------------------------------------------------------------------!
       2             : !   CP2K: A general program to perform molecular dynamics simulations                              !
       3             : !   Copyright 2000-2024 CP2K developers group <https://cp2k.org>                                   !
       4             : !                                                                                                  !
       5             : !   SPDX-License-Identifier: GPL-2.0-or-later                                                      !
       6             : !--------------------------------------------------------------------------------------------------!
       7             : 
       8             : ! **************************************************************************************************
       9             : !> \brief holds all the structure types needed for Monte Carlo, except
      10             : !>      the mc_environment_type
      11             : !> \par History
      12             : !>      none
      13             : !> \author MJM
      14             : ! **************************************************************************************************
      15             : MODULE mc_types
      16             :    USE atomic_kind_types,               ONLY: atomic_kind_type,&
      17             :                                               get_atomic_kind
      18             :    USE cell_types,                      ONLY: cell_type,&
      19             :                                               get_cell
      20             :    USE cp_files,                        ONLY: close_file,&
      21             :                                               open_file
      22             :    USE cp_log_handling,                 ONLY: cp_logger_get_default_io_unit
      23             :    USE cp_subsys_types,                 ONLY: cp_subsys_get,&
      24             :                                               cp_subsys_type
      25             :    USE cp_units,                        ONLY: cp_unit_to_cp2k
      26             :    USE fist_environment_types,          ONLY: fist_env_get,&
      27             :                                               fist_environment_type
      28             :    USE fist_nonbond_env_types,          ONLY: fist_nonbond_env_get,&
      29             :                                               fist_nonbond_env_type
      30             :    USE force_env_types,                 ONLY: force_env_get,&
      31             :                                               force_env_p_type,&
      32             :                                               force_env_type,&
      33             :                                               use_fist_force,&
      34             :                                               use_qs_force
      35             :    USE global_types,                    ONLY: global_environment_type
      36             :    USE input_constants,                 ONLY: do_fist,&
      37             :                                               do_qs
      38             :    USE input_section_types,             ONLY: section_vals_get_subs_vals,&
      39             :                                               section_vals_type,&
      40             :                                               section_vals_val_get,&
      41             :                                               section_vals_val_set
      42             :    USE kinds,                           ONLY: default_path_length,&
      43             :                                               default_string_length,&
      44             :                                               dp
      45             :    USE mathconstants,                   ONLY: pi
      46             :    USE message_passing,                 ONLY: mp_comm_type,&
      47             :                                               mp_para_env_type
      48             :    USE molecule_kind_list_types,        ONLY: molecule_kind_list_p_type
      49             :    USE molecule_kind_types,             ONLY: atom_type,&
      50             :                                               get_molecule_kind,&
      51             :                                               molecule_kind_type
      52             :    USE pair_potential_types,            ONLY: pair_potential_pp_type
      53             :    USE particle_list_types,             ONLY: particle_list_p_type
      54             :    USE physcon,                         ONLY: boltzmann,&
      55             :                                               joule
      56             :    USE string_utilities,                ONLY: uppercase,&
      57             :                                               xstring
      58             : #include "../../base/base_uses.f90"
      59             : 
      60             :    IMPLICIT NONE
      61             : 
      62             :    PRIVATE
      63             : 
      64             : ! *** Global parameters ***
      65             : 
      66             :    PUBLIC :: mc_simpar_type, &
      67             :              mc_simulation_parameters_p_type, &
      68             :              mc_averages_type, mc_averages_p_type, &
      69             :              mc_moves_type, mc_moves_p_type, accattempt, &
      70             :              get_mc_par, set_mc_par, read_mc_section, &
      71             :              find_mc_rcut, mc_molecule_info_type, &
      72             :              mc_determine_molecule_info, mc_molecule_info_destroy, &
      73             :              mc_sim_par_create, mc_sim_par_destroy, &
      74             :              get_mc_molecule_info, &
      75             :              mc_input_file_type, mc_input_file_create, &
      76             :              get_mc_input_file, mc_input_file_destroy, &
      77             :              mc_input_parameters_check, &
      78             :              mc_ekin_type
      79             : 
      80             : ! **************************************************************************************************
      81             :    TYPE mc_simpar_type
      82             : ! contains all the parameters needed for running Monte Carlo simulations
      83             :       PRIVATE
      84             :       INTEGER, DIMENSION(:), POINTER :: avbmc_atom => NULL()
      85             :       INTEGER :: nstep = 0
      86             :       INTEGER :: iupvolume = 0
      87             :       INTEGER :: iuptrans = 0
      88             :       INTEGER :: iupcltrans = 0
      89             :       INTEGER :: nvirial = 0
      90             :       INTEGER :: nbox = 0
      91             :       INTEGER :: nmoves = 0
      92             :       INTEGER :: nswapmoves = 0
      93             :       INTEGER :: rm = 0
      94             :       INTEGER :: cl = 0
      95             :       INTEGER :: diff = 0
      96             :       INTEGER :: nstart = 0
      97             :       INTEGER :: source = 0
      98             :       TYPE(mp_comm_type) :: group = mp_comm_type()
      99             :       INTEGER :: iprint = 0
     100             :       LOGICAL :: ldiscrete = .FALSE.
     101             :       LOGICAL :: lbias = .FALSE.
     102             :       LOGICAL :: ionode = .FALSE.
     103             :       LOGICAL :: lrestart = .FALSE.
     104             :       LOGICAL :: lstop = .FALSE.
     105             :       LOGICAL :: lhmc = .FALSE.
     106             :       CHARACTER(LEN=20) :: ensemble = ""
     107             :       CHARACTER(LEN=default_path_length) :: restart_file_name = ""
     108             :       CHARACTER(LEN=default_path_length) :: molecules_file = ""
     109             :       CHARACTER(LEN=default_path_length) :: moves_file = ""
     110             :       CHARACTER(LEN=default_path_length) :: coords_file = ""
     111             :       CHARACTER(LEN=default_path_length) :: energy_file = ""
     112             :       CHARACTER(LEN=default_path_length) :: displacement_file = ""
     113             :       CHARACTER(LEN=default_path_length) :: cell_file = ""
     114             :       CHARACTER(LEN=default_path_length) :: dat_file = ""
     115             :       CHARACTER(LEN=default_path_length) :: data_file = ""
     116             :       CHARACTER(LEN=default_path_length) :: box2_file = ""
     117             :       CHARACTER(LEN=200) :: fft_lib = ""
     118             :       CHARACTER(LEN=50) :: PROGRAM = ""
     119             :       REAL(dp), DIMENSION(:), POINTER :: pmtraion_mol => NULL(), pmtrans_mol => NULL(), &
     120             :                                          pmrot_mol => NULL(), pmswap_mol => NULL(), &
     121             :                                          pbias => NULL(), pmavbmc_mol => NULL()
     122             :       REAL(dp) :: discrete_step = 0.0_dp
     123             :       REAL(dp) :: rmvolume = 0.0_dp, rmcltrans = 0.0_dp
     124             :       REAL(dp), DIMENSION(:), POINTER :: rmbond => NULL(), rmangle => NULL(), rmdihedral => NULL(), &
     125             :                                          rmrot => NULL(), rmtrans => NULL()
     126             :       REAL(dp), DIMENSION(:), POINTER :: eta => NULL()
     127             :       REAL(dp) :: temperature = 0.0_dp
     128             :       REAL(dp) :: pressure = 0.0_dp
     129             :       REAL(dp) :: rclus = 0.0_dp
     130             :       REAL(dp) :: pmavbmc = 0.0_dp
     131             :       REAL(dp) :: pmswap = 0.0_dp
     132             :       REAL(dp) :: pmvolume = 0.0_dp, pmvol_box = 0.0_dp, pmclus_box = 0.0_dp
     133             :       REAL(dp) :: pmhmc = 0.0_dp, pmhmc_box = 0.0_dp
     134             :       REAL(dp) :: pmtraion = 0.0_dp
     135             :       REAL(dp) :: pmtrans = 0.0_dp
     136             :       REAL(dp) :: pmcltrans = 0.0_dp
     137             :       REAL(dp) :: BETA = 0.0_dp
     138             :       REAL(dp) :: rcut = 0.0_dp
     139             :       REAL(dp), DIMENSION(:), POINTER :: avbmc_rmin => NULL(), avbmc_rmax => NULL()
     140             :       REAL(dp), DIMENSION(:), POINTER :: virial_temps => NULL()
     141             :       TYPE(mc_input_file_type), POINTER :: &
     142             :          mc_input_file => NULL(), mc_bias_file => NULL()
     143             :       TYPE(section_vals_type), POINTER :: input_file => NULL()
     144             :       TYPE(mc_molecule_info_type), POINTER :: mc_molecule_info => NULL()
     145             :       REAL(dp) :: exp_min_val = 0.0_dp, exp_max_val = 0.0_dp, min_val = 0.0_dp, max_val = 0.0_dp
     146             :       INTEGER     :: rand2skip = 0
     147             :    END TYPE mc_simpar_type
     148             : 
     149             : ! **************************************************************************************************
     150             :    TYPE mc_ekin_type
     151             : ! contains the kinetic energy of an MD sequence from hybrid MC
     152             :       REAL(dp) :: initial_ekin = 0.0_dp, final_ekin = 0.0_dp
     153             :    END TYPE mc_ekin_type
     154             : ! **************************************************************************************************
     155             :    TYPE mc_input_file_type
     156             : ! contains all the text of the input file
     157             :       PRIVATE
     158             :       INTEGER :: run_type_row = 0, run_type_column = 0, coord_row_start = 0, coord_row_end = 0, &
     159             :                  cell_row = 0, cell_column = 0, force_eval_row_start = 0, force_eval_row_end = 0, &
     160             :                  global_row_start = 0, global_row_end = 0, in_use = 0, nunits_empty = 0, &
     161             :                  motion_row_end = 0, motion_row_start = 0
     162             :       INTEGER, DIMENSION(:), POINTER :: mol_set_nmol_row => NULL(), mol_set_nmol_column => NULL()
     163             :       CHARACTER(LEN=default_string_length), DIMENSION(:), POINTER :: text => NULL()
     164             :       CHARACTER(LEN=default_string_length), DIMENSION(:), POINTER :: atom_names_empty => NULL()
     165             :       REAL(dp), DIMENSION(:, :), POINTER :: coordinates_empty => NULL()
     166             :    END TYPE mc_input_file_type
     167             : 
     168             : ! **************************************************************************************************
     169             :    TYPE mc_molecule_info_type
     170             : ! contains information on molecules...I had to do this because I use multiple force
     171             : ! environments, and they know nothing about each other
     172             :       PRIVATE
     173             :       INTEGER :: nboxes = 0
     174             :       CHARACTER(LEN=default_string_length), DIMENSION(:), POINTER :: names => NULL()
     175             :       CHARACTER(LEN=default_string_length), &
     176             :          DIMENSION(:, :), POINTER :: atom_names => NULL()
     177             :       REAL(dp), DIMENSION(:, :), POINTER :: conf_prob => NULL(), mass => NULL()
     178             :       INTEGER, DIMENSION(:, :), POINTER :: nchains => NULL()
     179             :       INTEGER :: nmol_types = 0, nchain_total = 0
     180             :       INTEGER, DIMENSION(:), POINTER :: nunits => NULL(), mol_type => NULL(), nunits_tot => NULL(), in_box => NULL()
     181             :    END TYPE mc_molecule_info_type
     182             : 
     183             : ! **************************************************************************************************
     184             :    TYPE mc_simulation_parameters_p_type
     185             : ! a pointer for multiple boxes
     186             :       TYPE(mc_simpar_type), POINTER :: mc_par => NULL()
     187             :    END TYPE mc_simulation_parameters_p_type
     188             : 
     189             : ! **************************************************************************************************
     190             :    TYPE mc_averages_type
     191             : ! contains some data that is averaged throughout the course of a run
     192             :       REAL(KIND=dp) :: ave_energy = 0.0_dp
     193             :       REAL(KIND=dp) :: ave_energy_squared = 0.0_dp
     194             :       REAL(KIND=dp) :: ave_volume = 0.0_dp
     195             :       REAL(KIND=dp) :: molecules = 0.0_dp
     196             :    END TYPE mc_averages_type
     197             : 
     198             : ! **************************************************************************************************
     199             :    TYPE mc_averages_p_type
     200             :       TYPE(mc_averages_type), POINTER :: averages => NULL()
     201             :    END TYPE mc_averages_p_type
     202             : 
     203             : ! **************************************************************************************************
     204             :    TYPE mc_moves_type
     205             : ! contains data for how many moves of a give type we've accepted/rejected
     206             :       TYPE(accattempt), POINTER :: bias_bond => NULL()
     207             :       TYPE(accattempt), POINTER :: bias_angle => NULL()
     208             :       TYPE(accattempt), POINTER :: bias_dihedral => NULL()
     209             :       TYPE(accattempt), POINTER :: bias_trans => NULL()
     210             :       TYPE(accattempt), POINTER :: bias_cltrans => NULL()
     211             :       TYPE(accattempt), POINTER :: bias_rot => NULL()
     212             :       TYPE(accattempt), POINTER :: bond => NULL()
     213             :       TYPE(accattempt), POINTER :: angle => NULL()
     214             :       TYPE(accattempt), POINTER :: dihedral => NULL()
     215             :       TYPE(accattempt), POINTER :: trans => NULL()
     216             :       TYPE(accattempt), POINTER :: cltrans => NULL()
     217             :       TYPE(accattempt), POINTER :: rot => NULL()
     218             :       TYPE(accattempt), POINTER :: swap => NULL()
     219             :       TYPE(accattempt), POINTER :: volume => NULL()
     220             :       TYPE(accattempt), POINTER :: hmc => NULL()
     221             :       TYPE(accattempt), POINTER :: avbmc_inin => NULL()
     222             :       TYPE(accattempt), POINTER :: avbmc_outin => NULL()
     223             :       TYPE(accattempt), POINTER :: avbmc_inout => NULL()
     224             :       TYPE(accattempt), POINTER :: avbmc_outout => NULL()
     225             :       TYPE(accattempt), POINTER :: Quickstep => NULL()
     226             :       REAL(KIND=dp) :: trans_dis = 0.0_dp, qtrans_dis = 0.0_dp
     227             :       REAL(KIND=dp) :: cltrans_dis = 0.0_dp, qcltrans_dis = 0.0_dp
     228             :       INTEGER :: empty = 0, grown = 0, empty_conf = 0, empty_avbmc = 0
     229             :    END TYPE mc_moves_type
     230             : 
     231             : ! **************************************************************************************************
     232             :    TYPE accattempt
     233             :       INTEGER :: successes = 0
     234             :       INTEGER :: qsuccesses = 0
     235             :       INTEGER :: attempts = 0
     236             :    END TYPE accattempt
     237             : 
     238             : ! **************************************************************************************************
     239             :    TYPE mc_moves_p_type
     240             :       TYPE(mc_moves_type), POINTER :: moves => NULL()
     241             :    END TYPE mc_moves_p_type
     242             : 
     243             : ! *** Global parameters ***
     244             :    CHARACTER(len=*), PARAMETER, PRIVATE :: moduleN = 'mc_types'
     245             : 
     246             : CONTAINS
     247             : 
     248             : ! **************************************************************************************************
     249             : !> \brief accesses the private elements of the mc_input_file_type
     250             : !> \param mc_input_file the input file you want data for
     251             : !>
     252             : !>    Suitable for parallel.
     253             : !> \param run_type_row ...
     254             : !> \param run_type_column ...
     255             : !> \param coord_row_start ...
     256             : !> \param coord_row_end ...
     257             : !> \param cell_row ...
     258             : !> \param cell_column ...
     259             : !> \param force_eval_row_start ...
     260             : !> \param force_eval_row_end ...
     261             : !> \param global_row_start ...
     262             : !> \param global_row_end ...
     263             : !> \param mol_set_nmol_row ...
     264             : !> \param mol_set_nmol_column ...
     265             : !> \param in_use ...
     266             : !> \param text ...
     267             : !> \param atom_names_empty ...
     268             : !> \param nunits_empty ...
     269             : !> \param coordinates_empty ...
     270             : !> \param motion_row_end ...
     271             : !> \param motion_row_start ...
     272             : !> \author MJM
     273             : ! **************************************************************************************************
     274         102 :    SUBROUTINE get_mc_input_file(mc_input_file, run_type_row, run_type_column, &
     275             :                                 coord_row_start, coord_row_end, cell_row, cell_column, &
     276             :                                 force_eval_row_start, force_eval_row_end, global_row_start, global_row_end, &
     277             :                                 mol_set_nmol_row, mol_set_nmol_column, in_use, text, atom_names_empty, &
     278             :                                 nunits_empty, coordinates_empty, motion_row_end, motion_row_start)
     279             : 
     280             :       TYPE(mc_input_file_type), POINTER                  :: mc_input_file
     281             :       INTEGER, INTENT(OUT), OPTIONAL :: run_type_row, run_type_column, coord_row_start, &
     282             :          coord_row_end, cell_row, cell_column, force_eval_row_start, force_eval_row_end, &
     283             :          global_row_start, global_row_end
     284             :       INTEGER, DIMENSION(:), OPTIONAL, POINTER           :: mol_set_nmol_row, mol_set_nmol_column
     285             :       INTEGER, INTENT(OUT), OPTIONAL                     :: in_use
     286             :       CHARACTER(LEN=default_string_length), &
     287             :          DIMENSION(:), OPTIONAL, POINTER                 :: text, atom_names_empty
     288             :       INTEGER, INTENT(OUT), OPTIONAL                     :: nunits_empty
     289             :       REAL(dp), DIMENSION(:, :), OPTIONAL, POINTER       :: coordinates_empty
     290             :       INTEGER, INTENT(OUT), OPTIONAL                     :: motion_row_end, motion_row_start
     291             : 
     292         102 :       IF (PRESENT(in_use)) in_use = mc_input_file%in_use
     293         102 :       IF (PRESENT(run_type_row)) run_type_row = mc_input_file%run_type_row
     294         102 :       IF (PRESENT(run_type_column)) run_type_column = mc_input_file%run_type_column
     295         102 :       IF (PRESENT(coord_row_start)) coord_row_start = mc_input_file%coord_row_start
     296         102 :       IF (PRESENT(coord_row_end)) coord_row_end = mc_input_file%coord_row_end
     297         102 :       IF (PRESENT(cell_row)) cell_row = mc_input_file%cell_row
     298         102 :       IF (PRESENT(cell_column)) cell_column = mc_input_file%cell_column
     299         102 :       IF (PRESENT(force_eval_row_start)) force_eval_row_start = mc_input_file%force_eval_row_start
     300         102 :       IF (PRESENT(force_eval_row_end)) force_eval_row_end = mc_input_file%force_eval_row_end
     301         102 :       IF (PRESENT(global_row_start)) global_row_start = mc_input_file%global_row_start
     302         102 :       IF (PRESENT(global_row_end)) global_row_end = mc_input_file%global_row_end
     303         102 :       IF (PRESENT(nunits_empty)) nunits_empty = mc_input_file%nunits_empty
     304         102 :       IF (PRESENT(motion_row_start)) motion_row_start = mc_input_file%motion_row_start
     305         102 :       IF (PRESENT(motion_row_end)) motion_row_end = mc_input_file%motion_row_end
     306             : 
     307         102 :       IF (PRESENT(mol_set_nmol_row)) mol_set_nmol_row => mc_input_file%mol_set_nmol_row
     308         102 :       IF (PRESENT(mol_set_nmol_column)) mol_set_nmol_column => mc_input_file%mol_set_nmol_column
     309         102 :       IF (PRESENT(text)) text => mc_input_file%text
     310         102 :       IF (PRESENT(atom_names_empty)) atom_names_empty => mc_input_file%atom_names_empty
     311         102 :       IF (PRESENT(coordinates_empty)) coordinates_empty => mc_input_file%coordinates_empty
     312             : 
     313         102 :    END SUBROUTINE GET_MC_INPUT_FILE
     314             : ! **************************************************************************************************
     315             : !> \brief ...
     316             : !> \param mc_par ...
     317             : !> \param nstep ...
     318             : !> \param nvirial ...
     319             : !> \param iuptrans ...
     320             : !> \param iupcltrans ...
     321             : !> \param iupvolume ...
     322             : !> \param nmoves ...
     323             : !> \param nswapmoves ...
     324             : !> \param rm ...
     325             : !> \param cl ...
     326             : !> \param diff ...
     327             : !> \param nstart ...
     328             : !> \param source ...
     329             : !> \param group ...
     330             : !> \param lbias ...
     331             : !> \param ionode ...
     332             : !> \param lrestart ...
     333             : !> \param lstop ...
     334             : !> \param rmvolume ...
     335             : !> \param rmcltrans ...
     336             : !> \param rmbond ...
     337             : !> \param rmangle ...
     338             : !> \param rmrot ...
     339             : !> \param rmtrans ...
     340             : !> \param temperature ...
     341             : !> \param pressure ...
     342             : !> \param rclus ...
     343             : !> \param BETA ...
     344             : !> \param pmswap ...
     345             : !> \param pmvolume ...
     346             : !> \param pmtraion ...
     347             : !> \param pmtrans ...
     348             : !> \param pmcltrans ...
     349             : !> \param ensemble ...
     350             : !> \param PROGRAM ...
     351             : !> \param restart_file_name ...
     352             : !> \param molecules_file ...
     353             : !> \param moves_file ...
     354             : !> \param coords_file ...
     355             : !> \param energy_file ...
     356             : !> \param displacement_file ...
     357             : !> \param cell_file ...
     358             : !> \param dat_file ...
     359             : !> \param data_file ...
     360             : !> \param box2_file ...
     361             : !> \param fft_lib ...
     362             : !> \param iprint ...
     363             : !> \param rcut ...
     364             : !> \param ldiscrete ...
     365             : !> \param discrete_step ...
     366             : !> \param pmavbmc ...
     367             : !> \param pbias ...
     368             : !> \param avbmc_atom ...
     369             : !> \param avbmc_rmin ...
     370             : !> \param avbmc_rmax ...
     371             : !> \param rmdihedral ...
     372             : !> \param input_file ...
     373             : !> \param mc_molecule_info ...
     374             : !> \param pmswap_mol ...
     375             : !> \param pmavbmc_mol ...
     376             : !> \param pmtrans_mol ...
     377             : !> \param pmrot_mol ...
     378             : !> \param pmtraion_mol ...
     379             : !> \param mc_input_file ...
     380             : !> \param mc_bias_file ...
     381             : !> \param pmvol_box ...
     382             : !> \param pmclus_box ...
     383             : !> \param virial_temps ...
     384             : !> \param exp_min_val ...
     385             : !> \param exp_max_val ...
     386             : !> \param min_val ...
     387             : !> \param max_val ...
     388             : !> \param eta ...
     389             : !> \param pmhmc ...
     390             : !> \param pmhmc_box ...
     391             : !> \param lhmc ...
     392             : !> \param rand2skip ...
     393             : ! **************************************************************************************************
     394        2646 :    SUBROUTINE get_mc_par(mc_par, nstep, nvirial, iuptrans, iupcltrans, iupvolume, &
     395             :                          nmoves, nswapmoves, rm, cl, diff, nstart, &
     396             :                          source, group, lbias, ionode, lrestart, lstop, rmvolume, rmcltrans, rmbond, rmangle, &
     397             :                          rmrot, rmtrans, temperature, pressure, rclus, BETA, pmswap, pmvolume, pmtraion, pmtrans, &
     398             :                          pmcltrans, ensemble, PROGRAM, restart_file_name, molecules_file, moves_file, coords_file, &
     399             :                          energy_file, displacement_file, cell_file, dat_file, data_file, box2_file, &
     400             :                          fft_lib, iprint, rcut, ldiscrete, discrete_step, &
     401             :                          pmavbmc, pbias, avbmc_atom, avbmc_rmin, avbmc_rmax, rmdihedral, &
     402             :                          input_file, mc_molecule_info, pmswap_mol, pmavbmc_mol, pmtrans_mol, pmrot_mol, &
     403             :                          pmtraion_mol, mc_input_file, mc_bias_file, pmvol_box, pmclus_box, virial_temps, &
     404             :                          exp_min_val, exp_max_val, min_val, max_val, eta, pmhmc, pmhmc_box, lhmc, rand2skip)
     405             : 
     406             : ! **************************************************************************************************
     407             : !> \brief accesses the private elements of the mc_parameters_type
     408             : !> \param mc_par the structure mc parameters you want
     409             : !>
     410             : !>    Suitable for parallel.
     411             : !> \author MJM
     412             :       TYPE(mc_simpar_type), POINTER                      :: mc_par
     413             :       INTEGER, INTENT(OUT), OPTIONAL                     :: nstep, nvirial, iuptrans, iupcltrans, &
     414             :                                                             iupvolume, nmoves, nswapmoves, rm, cl, &
     415             :                                                             diff, nstart, source
     416             :       TYPE(mp_comm_type), INTENT(OUT), OPTIONAL          :: group
     417             :       LOGICAL, INTENT(OUT), OPTIONAL                     :: lbias, ionode, lrestart, lstop
     418             :       REAL(KIND=dp), INTENT(OUT), OPTIONAL               :: rmvolume, rmcltrans
     419             :       REAL(KIND=dp), DIMENSION(:), OPTIONAL, POINTER     :: rmbond, rmangle, rmrot, rmtrans
     420             :       REAL(KIND=dp), INTENT(OUT), OPTIONAL               :: temperature, pressure, rclus, BETA, &
     421             :                                                             pmswap, pmvolume, pmtraion, pmtrans, &
     422             :                                                             pmcltrans
     423             :       CHARACTER(LEN=*), INTENT(OUT), OPTIONAL :: ensemble, PROGRAM, restart_file_name, &
     424             :          molecules_file, moves_file, coords_file, energy_file, displacement_file, cell_file, &
     425             :          dat_file, data_file, box2_file, fft_lib
     426             :       INTEGER, INTENT(OUT), OPTIONAL                     :: iprint
     427             :       REAL(KIND=dp), INTENT(OUT), OPTIONAL               :: rcut
     428             :       LOGICAL, INTENT(OUT), OPTIONAL                     :: ldiscrete
     429             :       REAL(KIND=dp), INTENT(OUT), OPTIONAL               :: discrete_step, pmavbmc
     430             :       REAL(KIND=dp), DIMENSION(:), OPTIONAL, POINTER     :: pbias
     431             :       INTEGER, DIMENSION(:), OPTIONAL, POINTER           :: avbmc_atom
     432             :       REAL(KIND=dp), DIMENSION(:), OPTIONAL, POINTER     :: avbmc_rmin, avbmc_rmax, rmdihedral
     433             :       TYPE(section_vals_type), OPTIONAL, POINTER         :: input_file
     434             :       TYPE(mc_molecule_info_type), OPTIONAL, POINTER     :: mc_molecule_info
     435             :       REAL(dp), DIMENSION(:), OPTIONAL, POINTER          :: pmswap_mol
     436             :       REAL(KIND=dp), DIMENSION(:), OPTIONAL, POINTER     :: pmavbmc_mol, pmtrans_mol, pmrot_mol, &
     437             :                                                             pmtraion_mol
     438             :       TYPE(mc_input_file_type), OPTIONAL, POINTER        :: mc_input_file, mc_bias_file
     439             :       REAL(KIND=dp), INTENT(OUT), OPTIONAL               :: pmvol_box, pmclus_box
     440             :       REAL(KIND=dp), DIMENSION(:), OPTIONAL, POINTER     :: virial_temps
     441             :       REAL(KIND=dp), INTENT(OUT), OPTIONAL               :: exp_min_val, exp_max_val, min_val, &
     442             :                                                             max_val
     443             :       REAL(KIND=dp), DIMENSION(:), OPTIONAL, POINTER     :: eta
     444             :       REAL(KIND=dp), INTENT(OUT), OPTIONAL               :: pmhmc, pmhmc_box
     445             :       LOGICAL, INTENT(OUT), OPTIONAL                     :: lhmc
     446             :       INTEGER, INTENT(OUT), OPTIONAL                     :: rand2skip
     447             : 
     448        3295 :       IF (PRESENT(nstep)) nstep = mc_par%nstep
     449        3295 :       IF (PRESENT(nvirial)) nvirial = mc_par%nvirial
     450        3295 :       IF (PRESENT(iuptrans)) iuptrans = mc_par%iuptrans
     451        3295 :       IF (PRESENT(iupcltrans)) iupcltrans = mc_par%iupcltrans
     452        3295 :       IF (PRESENT(iupvolume)) iupvolume = mc_par%iupvolume
     453        3295 :       IF (PRESENT(nmoves)) nmoves = mc_par%nmoves
     454        3295 :       IF (PRESENT(nswapmoves)) nswapmoves = mc_par%nswapmoves
     455        3295 :       IF (PRESENT(rm)) rm = mc_par%rm
     456        3295 :       IF (PRESENT(cl)) cl = mc_par%cl
     457        3295 :       IF (PRESENT(diff)) diff = mc_par%diff
     458        3295 :       IF (PRESENT(nstart)) nstart = mc_par%nstart
     459        3295 :       IF (PRESENT(source)) source = mc_par%source
     460        3295 :       IF (PRESENT(group)) group = mc_par%group
     461        3295 :       IF (PRESENT(iprint)) iprint = mc_par%iprint
     462             : 
     463        3295 :       IF (PRESENT(lbias)) lbias = mc_par%lbias
     464        3295 :       IF (PRESENT(ionode)) ionode = mc_par%ionode
     465        3295 :       IF (PRESENT(lrestart)) lrestart = mc_par%lrestart
     466        3295 :       IF (PRESENT(lstop)) lstop = mc_par%lstop
     467        3295 :       IF (PRESENT(ldiscrete)) ldiscrete = mc_par%ldiscrete
     468             : 
     469        3295 :       IF (PRESENT(virial_temps)) virial_temps => mc_par%virial_temps
     470        3295 :       IF (PRESENT(avbmc_atom)) avbmc_atom => mc_par%avbmc_atom
     471        3295 :       IF (PRESENT(avbmc_rmin)) avbmc_rmin => mc_par%avbmc_rmin
     472        3295 :       IF (PRESENT(avbmc_rmax)) avbmc_rmax => mc_par%avbmc_rmax
     473        3295 :       IF (PRESENT(rcut)) rcut = mc_par%rcut
     474        3295 :       IF (PRESENT(discrete_step)) discrete_step = mc_par%discrete_step
     475        3295 :       IF (PRESENT(rmvolume)) rmvolume = mc_par%rmvolume
     476        3295 :       IF (PRESENT(rmcltrans)) rmcltrans = mc_par%rmcltrans
     477        3295 :       IF (PRESENT(temperature)) temperature = mc_par%temperature
     478        3295 :       IF (PRESENT(pressure)) pressure = mc_par%pressure
     479        3295 :       IF (PRESENT(rclus)) rclus = mc_par%rclus
     480        3295 :       IF (PRESENT(BETA)) BETA = mc_par%BETA
     481        3295 :       IF (PRESENT(exp_max_val)) exp_max_val = mc_par%exp_max_val
     482        3295 :       IF (PRESENT(exp_min_val)) exp_min_val = mc_par%exp_min_val
     483        3295 :       IF (PRESENT(max_val)) max_val = mc_par%max_val
     484        3295 :       IF (PRESENT(min_val)) min_val = mc_par%min_val
     485        3295 :       IF (PRESENT(pmswap)) pmswap = mc_par%pmswap
     486        3295 :       IF (PRESENT(pmvolume)) pmvolume = mc_par%pmvolume
     487        3295 :       IF (PRESENT(lhmc)) lhmc = mc_par%lhmc
     488        3295 :       IF (PRESENT(pmhmc)) pmhmc = mc_par%pmhmc
     489        3295 :       IF (PRESENT(pmhmc_box)) pmhmc_box = mc_par%pmhmc_box
     490        3295 :       IF (PRESENT(pmvol_box)) pmvol_box = mc_par%pmvol_box
     491        3295 :       IF (PRESENT(pmclus_box)) pmclus_box = mc_par%pmclus_box
     492        3295 :       IF (PRESENT(pmtraion)) pmtraion = mc_par%pmtraion
     493        3295 :       IF (PRESENT(pmtrans)) pmtrans = mc_par%pmtrans
     494        3295 :       IF (PRESENT(pmcltrans)) pmcltrans = mc_par%pmcltrans
     495        3295 :       IF (PRESENT(pmavbmc)) pmavbmc = mc_par%pmavbmc
     496        3295 :       IF (PRESENT(pmrot_mol)) pmrot_mol => mc_par%pmrot_mol
     497        3295 :       IF (PRESENT(pmtrans_mol)) pmtrans_mol => mc_par%pmtrans_mol
     498        3295 :       IF (PRESENT(pmtraion_mol)) pmtraion_mol => mc_par%pmtraion_mol
     499        3295 :       IF (PRESENT(pmavbmc_mol)) pmavbmc_mol => mc_par%pmavbmc_mol
     500        3295 :       IF (PRESENT(pbias)) pbias => mc_par%pbias
     501             : 
     502        3295 :       IF (PRESENT(rmbond)) rmbond => mc_par%rmbond
     503        3295 :       IF (PRESENT(rmangle)) rmangle => mc_par%rmangle
     504        3295 :       IF (PRESENT(rmdihedral)) rmdihedral => mc_par%rmdihedral
     505        3295 :       IF (PRESENT(rmrot)) rmrot => mc_par%rmrot
     506        3295 :       IF (PRESENT(rmtrans)) rmtrans => mc_par%rmtrans
     507             : 
     508        3295 :       IF (PRESENT(eta)) eta => mc_par%eta
     509             : 
     510        3295 :       IF (PRESENT(ensemble)) ensemble = mc_par%ensemble
     511        3295 :       IF (PRESENT(PROGRAM)) PROGRAM = mc_par%program
     512        3295 :       IF (PRESENT(restart_file_name)) restart_file_name = &
     513          32 :          mc_par%restart_file_name
     514        3295 :       IF (PRESENT(moves_file)) moves_file = mc_par%moves_file
     515        3295 :       IF (PRESENT(coords_file)) coords_file = mc_par%coords_file
     516        3295 :       IF (PRESENT(molecules_file)) molecules_file = mc_par%molecules_file
     517        3295 :       IF (PRESENT(energy_file)) energy_file = mc_par%energy_file
     518        3295 :       IF (PRESENT(displacement_file)) displacement_file = &
     519          24 :          mc_par%displacement_file
     520        3295 :       IF (PRESENT(cell_file)) cell_file = mc_par%cell_file
     521        3295 :       IF (PRESENT(dat_file)) dat_file = mc_par%dat_file
     522        3295 :       IF (PRESENT(data_file)) data_file = mc_par%data_file
     523        3295 :       IF (PRESENT(box2_file)) box2_file = mc_par%box2_file
     524        3295 :       IF (PRESENT(fft_lib)) fft_lib = mc_par%fft_lib
     525             : 
     526        3295 :       IF (PRESENT(input_file)) input_file => mc_par%input_file
     527        3295 :       IF (PRESENT(mc_molecule_info)) mc_molecule_info => mc_par%mc_molecule_info
     528        3295 :       IF (PRESENT(mc_input_file)) mc_input_file => mc_par%mc_input_file
     529        3295 :       IF (PRESENT(mc_bias_file)) mc_bias_file => mc_par%mc_bias_file
     530             : 
     531        3295 :       IF (PRESENT(pmswap_mol)) pmswap_mol => mc_par%pmswap_mol
     532        3295 :       IF (PRESENT(rand2skip)) rand2skip = mc_par%rand2skip
     533        3295 :    END SUBROUTINE get_mc_par
     534             : 
     535             : ! **************************************************************************************************
     536             : !> \brief ...
     537             : !> \param mc_molecule_info ...
     538             : !> \param nmol_types ...
     539             : !> \param nchain_total ...
     540             : !> \param nboxes ...
     541             : !> \param names ...
     542             : !> \param conf_prob ...
     543             : !> \param nchains ...
     544             : !> \param nunits ...
     545             : !> \param mol_type ...
     546             : !> \param nunits_tot ...
     547             : !> \param in_box ...
     548             : !> \param atom_names ...
     549             : !> \param mass ...
     550             : ! **************************************************************************************************
     551        3616 :    SUBROUTINE get_mc_molecule_info(mc_molecule_info, nmol_types, nchain_total, nboxes, &
     552             :                                    names, conf_prob, nchains, nunits, mol_type, nunits_tot, in_box, atom_names, &
     553             :                                    mass)
     554             : 
     555             : ! **************************************************************************************************
     556             : !> \brief accesses the private elements of the mc_molecule_info_type
     557             : !> \param mc_molecule_info the structure you want the parameters for
     558             : !>
     559             : !>    Suitable for parallel.
     560             : !> \author MJM
     561             :       TYPE(mc_molecule_info_type), POINTER               :: mc_molecule_info
     562             :       INTEGER, INTENT(OUT), OPTIONAL                     :: nmol_types, nchain_total, nboxes
     563             :       CHARACTER(LEN=default_string_length), &
     564             :          DIMENSION(:), OPTIONAL, POINTER                 :: names
     565             :       REAL(dp), DIMENSION(:, :), OPTIONAL, POINTER       :: conf_prob
     566             :       INTEGER, DIMENSION(:, :), OPTIONAL, POINTER        :: nchains
     567             :       INTEGER, DIMENSION(:), OPTIONAL, POINTER           :: nunits, mol_type, nunits_tot, in_box
     568             :       CHARACTER(LEN=default_string_length), &
     569             :          DIMENSION(:, :), OPTIONAL, POINTER              :: atom_names
     570             :       REAL(dp), DIMENSION(:, :), OPTIONAL, POINTER       :: mass
     571             : 
     572        3616 :       IF (PRESENT(nboxes)) nboxes = mc_molecule_info%nboxes
     573        3616 :       IF (PRESENT(nchain_total)) nchain_total = mc_molecule_info%nchain_total
     574        3616 :       IF (PRESENT(nmol_types)) nmol_types = mc_molecule_info%nmol_types
     575             : 
     576        3616 :       IF (PRESENT(names)) names => mc_molecule_info%names
     577        3616 :       IF (PRESENT(atom_names)) atom_names => mc_molecule_info%atom_names
     578             : 
     579        3616 :       IF (PRESENT(conf_prob)) conf_prob => mc_molecule_info%conf_prob
     580        3616 :       IF (PRESENT(mass)) mass => mc_molecule_info%mass
     581             : 
     582        3616 :       IF (PRESENT(nchains)) nchains => mc_molecule_info%nchains
     583        3616 :       IF (PRESENT(nunits)) nunits => mc_molecule_info%nunits
     584        3616 :       IF (PRESENT(mol_type)) mol_type => mc_molecule_info%mol_type
     585        3616 :       IF (PRESENT(nunits_tot)) nunits_tot => mc_molecule_info%nunits_tot
     586        3616 :       IF (PRESENT(in_box)) in_box => mc_molecule_info%in_box
     587             : 
     588        3616 :    END SUBROUTINE get_mc_molecule_info
     589             : 
     590             : ! **************************************************************************************************
     591             : !> \brief changes the private elements of the mc_parameters_type
     592             : !> \param mc_par the structure mc parameters you want
     593             : !> \param rm ...
     594             : !> \param cl ...
     595             : !> \param diff ...
     596             : !> \param nstart ...
     597             : !> \param rmvolume ...
     598             : !> \param rmcltrans ...
     599             : !> \param rmbond ...
     600             : !> \param rmangle ...
     601             : !> \param rmdihedral ...
     602             : !> \param rmrot ...
     603             : !> \param rmtrans ...
     604             : !> \param PROGRAM ...
     605             : !> \param nmoves ...
     606             : !> \param nswapmoves ...
     607             : !> \param lstop ...
     608             : !> \param temperature ...
     609             : !> \param pressure ...
     610             : !> \param rclus ...
     611             : !> \param iuptrans ...
     612             : !> \param iupcltrans ...
     613             : !> \param iupvolume ...
     614             : !> \param pmswap ...
     615             : !> \param pmvolume ...
     616             : !> \param pmtraion ...
     617             : !> \param pmtrans ...
     618             : !> \param pmcltrans ...
     619             : !> \param BETA ...
     620             : !> \param rcut ...
     621             : !> \param iprint ...
     622             : !> \param lbias ...
     623             : !> \param nstep ...
     624             : !> \param lrestart ...
     625             : !> \param ldiscrete ...
     626             : !> \param discrete_step ...
     627             : !> \param pmavbmc ...
     628             : !> \param mc_molecule_info ...
     629             : !> \param pmavbmc_mol ...
     630             : !> \param pmtrans_mol ...
     631             : !> \param pmrot_mol ...
     632             : !> \param pmtraion_mol ...
     633             : !> \param pmswap_mol ...
     634             : !> \param avbmc_rmin ...
     635             : !> \param avbmc_rmax ...
     636             : !> \param avbmc_atom ...
     637             : !> \param pbias ...
     638             : !> \param ensemble ...
     639             : !> \param pmvol_box ...
     640             : !> \param pmclus_box ...
     641             : !> \param eta ...
     642             : !> \param mc_input_file ...
     643             : !> \param mc_bias_file ...
     644             : !> \param exp_max_val ...
     645             : !> \param exp_min_val ...
     646             : !> \param min_val ...
     647             : !> \param max_val ...
     648             : !> \param pmhmc ...
     649             : !> \param pmhmc_box ...
     650             : !> \param lhmc ...
     651             : !> \param ionode ...
     652             : !> \param source ...
     653             : !> \param group ...
     654             : !> \param rand2skip ...
     655             : !>    Suitable for parallel.
     656             : !> \author MJM
     657             : ! **************************************************************************************************
     658         154 :    SUBROUTINE set_mc_par(mc_par, rm, cl, &
     659             :                          diff, nstart, rmvolume, rmcltrans, rmbond, rmangle, rmdihedral, rmrot, rmtrans, PROGRAM, &
     660             :                          nmoves, nswapmoves, lstop, temperature, pressure, rclus, iuptrans, iupcltrans, iupvolume, &
     661             :                          pmswap, pmvolume, pmtraion, pmtrans, pmcltrans, BETA, rcut, iprint, lbias, nstep, &
     662             :                          lrestart, ldiscrete, discrete_step, pmavbmc, mc_molecule_info, &
     663             :                          pmavbmc_mol, pmtrans_mol, pmrot_mol, pmtraion_mol, pmswap_mol, &
     664             :                          avbmc_rmin, avbmc_rmax, avbmc_atom, pbias, ensemble, pmvol_box, pmclus_box, eta, &
     665             :                          mc_input_file, mc_bias_file, exp_max_val, exp_min_val, min_val, max_val, &
     666             :                          pmhmc, pmhmc_box, lhmc, ionode, source, group, rand2skip)
     667             : 
     668             :       TYPE(mc_simpar_type), POINTER                      :: mc_par
     669             :       INTEGER, INTENT(IN), OPTIONAL                      :: rm, cl, diff, nstart
     670             :       REAL(KIND=dp), INTENT(IN), OPTIONAL                :: rmvolume, rmcltrans
     671             :       REAL(KIND=dp), DIMENSION(:), OPTIONAL, POINTER     :: rmbond, rmangle, rmdihedral, rmrot, &
     672             :                                                             rmtrans
     673             :       CHARACTER(LEN=*), INTENT(IN), OPTIONAL             :: PROGRAM
     674             :       INTEGER, INTENT(IN), OPTIONAL                      :: nmoves, nswapmoves
     675             :       LOGICAL, INTENT(IN), OPTIONAL                      :: lstop
     676             :       REAL(KIND=dp), INTENT(IN), OPTIONAL                :: temperature, pressure, rclus
     677             :       INTEGER, INTENT(IN), OPTIONAL                      :: iuptrans, iupcltrans, iupvolume
     678             :       REAL(KIND=dp), INTENT(IN), OPTIONAL                :: pmswap, pmvolume, pmtraion, pmtrans, &
     679             :                                                             pmcltrans, BETA, rcut
     680             :       INTEGER, INTENT(IN), OPTIONAL                      :: iprint
     681             :       LOGICAL, INTENT(IN), OPTIONAL                      :: lbias
     682             :       INTEGER, INTENT(IN), OPTIONAL                      :: nstep
     683             :       LOGICAL, INTENT(IN), OPTIONAL                      :: lrestart, ldiscrete
     684             :       REAL(KIND=dp), INTENT(IN), OPTIONAL                :: discrete_step, pmavbmc
     685             :       TYPE(mc_molecule_info_type), OPTIONAL, POINTER     :: mc_molecule_info
     686             :       REAL(dp), DIMENSION(:), OPTIONAL, POINTER          :: pmavbmc_mol, pmtrans_mol, pmrot_mol, &
     687             :                                                             pmtraion_mol, pmswap_mol, avbmc_rmin, &
     688             :                                                             avbmc_rmax
     689             :       INTEGER, DIMENSION(:), OPTIONAL, POINTER           :: avbmc_atom
     690             :       REAL(dp), DIMENSION(:), OPTIONAL, POINTER          :: pbias
     691             :       CHARACTER(LEN=*), INTENT(IN), OPTIONAL             :: ensemble
     692             :       REAL(KIND=dp), INTENT(IN), OPTIONAL                :: pmvol_box, pmclus_box
     693             :       REAL(KIND=dp), DIMENSION(:), OPTIONAL, POINTER     :: eta
     694             :       TYPE(mc_input_file_type), OPTIONAL, POINTER        :: mc_input_file, mc_bias_file
     695             :       REAL(KIND=dp), INTENT(IN), OPTIONAL                :: exp_max_val, exp_min_val, min_val, &
     696             :                                                             max_val, pmhmc, pmhmc_box
     697             :       LOGICAL, INTENT(IN), OPTIONAL                      :: lhmc, ionode
     698             :       INTEGER, INTENT(IN), OPTIONAL                      :: source
     699             : 
     700             :       CLASS(mp_comm_type), INTENT(IN), OPTIONAL           :: group
     701             :       INTEGER, INTENT(IN), OPTIONAL                      :: rand2skip
     702             : 
     703             :       INTEGER                                            :: iparm
     704             : 
     705             : ! These are the only values that change during the course of the simulation
     706             : ! or are computed outside of this module
     707             : 
     708           8 :       IF (PRESENT(nstep)) mc_par%nstep = nstep
     709         154 :       IF (PRESENT(rm)) mc_par%rm = rm
     710         154 :       IF (PRESENT(cl)) mc_par%cl = cl
     711         154 :       IF (PRESENT(diff)) mc_par%diff = diff
     712         154 :       IF (PRESENT(nstart)) mc_par%nstart = nstart
     713         154 :       IF (PRESENT(nmoves)) mc_par%nmoves = nmoves
     714         154 :       IF (PRESENT(nswapmoves)) mc_par%nswapmoves = nswapmoves
     715         154 :       IF (PRESENT(iprint)) mc_par%iprint = iprint
     716         154 :       IF (PRESENT(iuptrans)) mc_par%iuptrans = iuptrans
     717         154 :       IF (PRESENT(iupcltrans)) mc_par%iupcltrans = iupcltrans
     718         154 :       IF (PRESENT(iupvolume)) mc_par%iupvolume = iupvolume
     719             : 
     720         154 :       IF (PRESENT(ldiscrete)) mc_par%ldiscrete = ldiscrete
     721         154 :       IF (PRESENT(lstop)) mc_par%lstop = lstop
     722         154 :       IF (PRESENT(lbias)) mc_par%lbias = lbias
     723         154 :       IF (PRESENT(lrestart)) mc_par%lrestart = lrestart
     724             : 
     725         154 :       IF (PRESENT(exp_max_val)) mc_par%exp_max_val = exp_max_val
     726         154 :       IF (PRESENT(exp_min_val)) mc_par%exp_min_val = exp_min_val
     727         154 :       IF (PRESENT(max_val)) mc_par%max_val = max_val
     728         154 :       IF (PRESENT(min_val)) mc_par%min_val = min_val
     729         154 :       IF (PRESENT(BETA)) mc_par%BETA = BETA
     730         154 :       IF (PRESENT(temperature)) mc_par%temperature = temperature
     731         154 :       IF (PRESENT(rcut)) mc_par%rcut = rcut
     732         154 :       IF (PRESENT(pressure)) mc_par%pressure = pressure
     733         154 :       IF (PRESENT(rclus)) mc_par%rclus = rclus
     734         154 :       IF (PRESENT(pmvolume)) mc_par%pmvolume = pmvolume
     735         154 :       IF (PRESENT(lhmc)) mc_par%lhmc = lhmc
     736         154 :       IF (PRESENT(pmhmc)) mc_par%pmhmc = pmhmc
     737         154 :       IF (PRESENT(pmhmc_box)) mc_par%pmhmc_box = pmhmc_box
     738         154 :       IF (PRESENT(pmvol_box)) mc_par%pmvol_box = pmvol_box
     739         154 :       IF (PRESENT(pmclus_box)) mc_par%pmclus_box = pmclus_box
     740         154 :       IF (PRESENT(pmswap)) mc_par%pmswap = pmswap
     741         154 :       IF (PRESENT(pmtrans)) mc_par%pmtrans = pmtrans
     742         154 :       IF (PRESENT(pmcltrans)) mc_par%pmcltrans = pmcltrans
     743         154 :       IF (PRESENT(pmtraion)) mc_par%pmtraion = pmtraion
     744         154 :       IF (PRESENT(pmavbmc)) mc_par%pmavbmc = pmavbmc
     745             : 
     746         154 :       IF (PRESENT(discrete_step)) mc_par%discrete_step = discrete_step
     747         154 :       IF (PRESENT(rmvolume)) mc_par%rmvolume = rmvolume
     748         154 :       IF (PRESENT(rmcltrans)) mc_par%rmcltrans = rmcltrans
     749             : 
     750         154 :       IF (PRESENT(mc_input_file)) mc_par%mc_input_file => mc_input_file
     751         154 :       IF (PRESENT(mc_bias_file)) mc_par%mc_bias_file => mc_bias_file
     752             : 
     753             : ! cannot just change the pointers, because then we have memory leaks
     754             : ! and the program crashes if we try to release it (in certain cases)
     755         154 :       IF (PRESENT(eta)) THEN
     756           0 :          DO iparm = 1, SIZE(eta)
     757           0 :             mc_par%eta(iparm) = eta(iparm)
     758             :          END DO
     759             :       END IF
     760         154 :       IF (PRESENT(rmbond)) THEN
     761           0 :          DO iparm = 1, SIZE(rmbond)
     762           0 :             mc_par%rmbond(iparm) = rmbond(iparm)
     763             :          END DO
     764             :       END IF
     765         154 :       IF (PRESENT(rmangle)) THEN
     766           0 :          DO iparm = 1, SIZE(rmangle)
     767           0 :             mc_par%rmangle(iparm) = rmangle(iparm)
     768             :          END DO
     769             :       END IF
     770         154 :       IF (PRESENT(rmdihedral)) THEN
     771           0 :          DO iparm = 1, SIZE(rmdihedral)
     772           0 :             mc_par%rmdihedral(iparm) = rmdihedral(iparm)
     773             :          END DO
     774             :       END IF
     775         154 :       IF (PRESENT(rmrot)) THEN
     776           0 :          DO iparm = 1, SIZE(rmrot)
     777           0 :             mc_par%rmrot(iparm) = rmrot(iparm)
     778             :          END DO
     779             :       END IF
     780         154 :       IF (PRESENT(rmtrans)) THEN
     781           0 :          DO iparm = 1, SIZE(rmtrans)
     782           0 :             mc_par%rmtrans(iparm) = rmtrans(iparm)
     783             :          END DO
     784             :       END IF
     785             : 
     786         154 :       IF (PRESENT(pmavbmc_mol)) THEN
     787          18 :          DO iparm = 1, SIZE(pmavbmc_mol)
     788          18 :             mc_par%pmavbmc_mol(iparm) = pmavbmc_mol(iparm)
     789             :          END DO
     790             :       END IF
     791         154 :       IF (PRESENT(pmtrans_mol)) THEN
     792          18 :          DO iparm = 1, SIZE(pmtrans_mol)
     793          18 :             mc_par%pmtrans_mol(iparm) = pmtrans_mol(iparm)
     794             :          END DO
     795             :       END IF
     796         154 :       IF (PRESENT(pmrot_mol)) THEN
     797          18 :          DO iparm = 1, SIZE(pmrot_mol)
     798          18 :             mc_par%pmrot_mol(iparm) = pmrot_mol(iparm)
     799             :          END DO
     800             :       END IF
     801         154 :       IF (PRESENT(pmtraion_mol)) THEN
     802          18 :          DO iparm = 1, SIZE(pmtraion_mol)
     803          18 :             mc_par%pmtraion_mol(iparm) = pmtraion_mol(iparm)
     804             :          END DO
     805             :       END IF
     806         154 :       IF (PRESENT(pmswap_mol)) THEN
     807          18 :          DO iparm = 1, SIZE(pmswap_mol)
     808          18 :             mc_par%pmswap_mol(iparm) = pmswap_mol(iparm)
     809             :          END DO
     810             :       END IF
     811             : 
     812         154 :       IF (PRESENT(avbmc_atom)) THEN
     813          18 :          DO iparm = 1, SIZE(avbmc_atom)
     814          18 :             mc_par%avbmc_atom(iparm) = avbmc_atom(iparm)
     815             :          END DO
     816             :       END IF
     817         154 :       IF (PRESENT(avbmc_rmin)) THEN
     818          18 :          DO iparm = 1, SIZE(avbmc_rmin)
     819          18 :             mc_par%avbmc_rmin(iparm) = avbmc_rmin(iparm)
     820             :          END DO
     821             :       END IF
     822         154 :       IF (PRESENT(avbmc_rmax)) THEN
     823          18 :          DO iparm = 1, SIZE(avbmc_rmax)
     824          18 :             mc_par%avbmc_rmax(iparm) = avbmc_rmax(iparm)
     825             :          END DO
     826             :       END IF
     827         154 :       IF (PRESENT(pbias)) THEN
     828          18 :          DO iparm = 1, SIZE(pbias)
     829          18 :             mc_par%pbias(iparm) = pbias(iparm)
     830             :          END DO
     831             :       END IF
     832             : 
     833         154 :       IF (PRESENT(PROGRAM)) mc_par%program = PROGRAM
     834         154 :       IF (PRESENT(ensemble)) mc_par%ensemble = ensemble
     835             : 
     836         154 :       IF (PRESENT(mc_molecule_info)) mc_par%mc_molecule_info => mc_molecule_info
     837         154 :       IF (PRESENT(source)) mc_par%source = source
     838         154 :       IF (PRESENT(group)) mc_par%group = group
     839         154 :       IF (PRESENT(ionode)) mc_par%ionode = ionode
     840             : 
     841         154 :       IF (PRESENT(rand2skip)) mc_par%rand2skip = rand2skip
     842         154 :    END SUBROUTINE set_mc_par
     843             : 
     844             : ! **************************************************************************************************
     845             : !> \brief creates (allocates) the mc_simulation_parameters type
     846             : !> \param mc_par the structure that will be created (allocated)
     847             : !> \param nmol_types the number of molecule types in the system
     848             : !> \author MJM
     849             : ! **************************************************************************************************
     850          26 :    SUBROUTINE mc_sim_par_create(mc_par, nmol_types)
     851             : 
     852             :       TYPE(mc_simpar_type), POINTER                      :: mc_par
     853             :       INTEGER, INTENT(IN)                                :: nmol_types
     854             : 
     855             :       NULLIFY (mc_par)
     856             : 
     857          26 :       ALLOCATE (mc_par)
     858          78 :       ALLOCATE (mc_par%pmtraion_mol(1:nmol_types))
     859          78 :       ALLOCATE (mc_par%pmtrans_mol(1:nmol_types))
     860          78 :       ALLOCATE (mc_par%pmrot_mol(1:nmol_types))
     861          78 :       ALLOCATE (mc_par%pmswap_mol(1:nmol_types))
     862             : 
     863          78 :       ALLOCATE (mc_par%eta(1:nmol_types))
     864             : 
     865          78 :       ALLOCATE (mc_par%rmbond(1:nmol_types))
     866          78 :       ALLOCATE (mc_par%rmangle(1:nmol_types))
     867          78 :       ALLOCATE (mc_par%rmdihedral(1:nmol_types))
     868          78 :       ALLOCATE (mc_par%rmtrans(1:nmol_types))
     869          78 :       ALLOCATE (mc_par%rmrot(1:nmol_types))
     870             : 
     871          78 :       ALLOCATE (mc_par%avbmc_atom(1:nmol_types))
     872          78 :       ALLOCATE (mc_par%avbmc_rmin(1:nmol_types))
     873          78 :       ALLOCATE (mc_par%avbmc_rmax(1:nmol_types))
     874          78 :       ALLOCATE (mc_par%pmavbmc_mol(1:nmol_types))
     875          78 :       ALLOCATE (mc_par%pbias(1:nmol_types))
     876             : 
     877          26 :       ALLOCATE (mc_par%mc_input_file)
     878          26 :       ALLOCATE (mc_par%mc_bias_file)
     879             : 
     880          26 :    END SUBROUTINE mc_sim_par_create
     881             : 
     882             : ! **************************************************************************************************
     883             : !> \brief destroys (deallocates) the mc_simulation_parameters type
     884             : !> \param mc_par the structure that will be destroyed
     885             : !> \author MJM
     886             : ! **************************************************************************************************
     887          26 :    SUBROUTINE mc_sim_par_destroy(mc_par)
     888             : 
     889             :       TYPE(mc_simpar_type), POINTER                      :: mc_par
     890             : 
     891          26 :       DEALLOCATE (mc_par%mc_input_file)
     892          26 :       DEALLOCATE (mc_par%mc_bias_file)
     893             : 
     894          26 :       DEALLOCATE (mc_par%pmtraion_mol)
     895          26 :       DEALLOCATE (mc_par%pmtrans_mol)
     896          26 :       DEALLOCATE (mc_par%pmrot_mol)
     897          26 :       DEALLOCATE (mc_par%pmswap_mol)
     898             : 
     899          26 :       DEALLOCATE (mc_par%eta)
     900             : 
     901          26 :       DEALLOCATE (mc_par%rmbond)
     902          26 :       DEALLOCATE (mc_par%rmangle)
     903          26 :       DEALLOCATE (mc_par%rmdihedral)
     904          26 :       DEALLOCATE (mc_par%rmtrans)
     905          26 :       DEALLOCATE (mc_par%rmrot)
     906             : 
     907          26 :       DEALLOCATE (mc_par%avbmc_atom)
     908          26 :       DEALLOCATE (mc_par%avbmc_rmin)
     909          26 :       DEALLOCATE (mc_par%avbmc_rmax)
     910          26 :       DEALLOCATE (mc_par%pmavbmc_mol)
     911          26 :       DEALLOCATE (mc_par%pbias)
     912          26 :       IF (mc_par%ensemble == "VIRIAL") THEN
     913           2 :          DEALLOCATE (mc_par%virial_temps)
     914             :       END IF
     915             : 
     916          26 :       DEALLOCATE (mc_par)
     917             :       NULLIFY (mc_par)
     918             : 
     919          26 :    END SUBROUTINE mc_sim_par_destroy
     920             : 
     921             : ! **************************************************************************************************
     922             : !> \brief creates (allocates) the mc_input_file_type
     923             : !> \param mc_input_file the structure that will be created (allocated)
     924             : !> \param input_file_name the name of the file to read
     925             : !> \param mc_molecule_info ...
     926             : !> \param empty_coords ...
     927             : !> \param lhmc ...
     928             : !> \author MJM
     929             : ! **************************************************************************************************
     930          40 :    SUBROUTINE mc_input_file_create(mc_input_file, input_file_name, &
     931          40 :                                    mc_molecule_info, empty_coords, lhmc)
     932             : 
     933             :       TYPE(mc_input_file_type), POINTER                  :: mc_input_file
     934             :       CHARACTER(LEN=*), INTENT(IN)                       :: input_file_name
     935             :       TYPE(mc_molecule_info_type), POINTER               :: mc_molecule_info
     936             :       REAL(dp), DIMENSION(:, :)                          :: empty_coords
     937             :       LOGICAL, INTENT(IN)                                :: lhmc
     938             : 
     939             :       CHARACTER(default_string_length)                   :: cdum, line, method_name
     940             :       CHARACTER(default_string_length), &
     941          40 :          DIMENSION(:, :), POINTER                        :: atom_names
     942             :       INTEGER :: abc_column, abc_row, cell_column, cell_row, idum, iline, io_stat, irep, iunit, &
     943             :          iw, line_number, nlines, nmol_types, nstart, row_number, unit
     944          40 :       INTEGER, DIMENSION(:), POINTER                     :: nunits
     945             : 
     946             : ! some stuff in case we need to write error messages to the screen
     947             : 
     948          80 :       iw = cp_logger_get_default_io_unit()
     949             : 
     950             : ! allocate the array we'll need in case we have an empty box
     951             :       CALL get_mc_molecule_info(mc_molecule_info, nmol_types=nmol_types, &
     952          40 :                                 nunits=nunits, atom_names=atom_names)
     953         120 :       ALLOCATE (mc_input_file%coordinates_empty(1:3, 1:nunits(1)))
     954         120 :       ALLOCATE (mc_input_file%atom_names_empty(1:nunits(1)))
     955         154 :       DO iunit = 1, nunits(1)
     956         114 :          mc_input_file%atom_names_empty(iunit) = atom_names(iunit, 1)
     957         496 :          mc_input_file%coordinates_empty(1:3, iunit) = empty_coords(1:3, iunit)
     958             :       END DO
     959          40 :       mc_input_file%nunits_empty = nunits(1)
     960             : 
     961             : ! allocate some arrays
     962         120 :       ALLOCATE (mc_input_file%mol_set_nmol_row(1:nmol_types))
     963          80 :       ALLOCATE (mc_input_file%mol_set_nmol_column(1:nmol_types))
     964             : 
     965             : ! now read in and store the input file, first finding out how many lines it is
     966             :       CALL open_file(file_name=input_file_name, &
     967          40 :                      unit_number=unit, file_action='READ', file_status='OLD')
     968             : 
     969          40 :       nlines = 0
     970        9240 :       DO
     971        9280 :          READ (unit, '(A)', IOSTAT=io_stat) line
     972        9280 :          IF (io_stat .NE. 0) EXIT
     973        9240 :          nlines = nlines + 1
     974             :       END DO
     975             : 
     976         120 :       ALLOCATE (mc_input_file%text(1:nlines))
     977             : 
     978          40 :       REWIND (unit)
     979        9280 :       DO iline = 1, nlines
     980        9280 :          READ (unit, '(A)') mc_input_file%text(iline)
     981             :       END DO
     982             : 
     983             : ! close the input file
     984          40 :       CALL close_file(unit_number=unit)
     985             : 
     986             : ! now we need to find the row and column numbers of a variety of things
     987             : ! first, Let's find the first END after GLOBAL
     988             :       CALL mc_parse_text(mc_input_file%text, 1, nlines, "&GLOBAL", .TRUE., &
     989          40 :                          mc_input_file%global_row_end, idum, start_row_number=mc_input_file%global_row_start)
     990          40 :       IF (mc_input_file%global_row_end == 0) THEN
     991           0 :          IF (iw > 0) THEN
     992           0 :             WRITE (iw, *)
     993           0 :             WRITE (iw, *) 'File name ', input_file_name
     994             :          END IF
     995             :          CALL cp_abort(__LOCATION__, &
     996           0 :                        'Could not find &END after &GLOBAL (make sure & is in the same column) and last line is blank')
     997             :       END IF
     998             : 
     999             : ! Let's find the first END after MOTION...we might need this whole section
    1000             : ! because of hybrid MD/MC moves, which requires the MD information to always
    1001             : ! be attached to the force env
    1002             :       CALL mc_parse_text(mc_input_file%text, 1, nlines, "&MOTION", .TRUE., &
    1003          40 :                          mc_input_file%motion_row_end, idum, start_row_number=mc_input_file%motion_row_start)
    1004          40 :       IF (mc_input_file%motion_row_end == 0) THEN
    1005           0 :          IF (iw > 0) THEN
    1006           0 :             WRITE (iw, *)
    1007           0 :             WRITE (iw, *) 'File name ', input_file_name, mc_input_file%motion_row_start
    1008             :          END IF
    1009             :          CALL cp_abort(__LOCATION__, &
    1010           0 :                        'Could not find &END after &MOTION (make sure & is in the same column) and last line is blank')
    1011             :       END IF
    1012             : 
    1013             : ! find &FORCE_EVAL sections
    1014             :       CALL mc_parse_text(mc_input_file%text, 1, nlines, "&FORCE_EVAL", .TRUE., &
    1015          40 :                          mc_input_file%force_eval_row_end, idum, start_row_number=mc_input_file%force_eval_row_start)
    1016             : 
    1017             : ! first, let's find the first END after &COORD, and the line of &COORD
    1018             :       CALL mc_parse_text(mc_input_file%text, 1, nlines, "&COORD", .TRUE., &
    1019          40 :                          mc_input_file%coord_row_end, idum)
    1020             :       CALL mc_parse_text(mc_input_file%text, 1, nlines, "&COORD", .FALSE., &
    1021          40 :                          mc_input_file%coord_row_start, idum)
    1022             : 
    1023          40 :       IF (mc_input_file%coord_row_end == 0) THEN
    1024           0 :          IF (iw > 0) THEN
    1025           0 :             WRITE (iw, *)
    1026           0 :             WRITE (iw, *) 'File name ', input_file_name
    1027             :          END IF
    1028             :          CALL cp_abort(__LOCATION__, &
    1029           0 :                        'Could not find &END after &COORD (make sure & is the first in the same column after &COORD)')
    1030             :       END IF
    1031             : 
    1032             : ! now the RUN_TYPE
    1033             :       CALL mc_parse_text(mc_input_file%text, 1, nlines, "RUN_TYPE", .FALSE., &
    1034          40 :                          mc_input_file%run_type_row, mc_input_file%run_type_column)
    1035          40 :       mc_input_file%run_type_column = mc_input_file%run_type_column + 9
    1036          40 :       IF (mc_input_file%run_type_row == 0) THEN
    1037           0 :          IF (iw > 0) THEN
    1038           0 :             WRITE (iw, *)
    1039           0 :             WRITE (iw, *) 'File name ', input_file_name
    1040             :          END IF
    1041             :          CALL cp_abort(__LOCATION__, &
    1042           0 :                        'Could not find RUN_TYPE in the input file (should be in the &GLOBAL section).')
    1043             :       END IF
    1044             : 
    1045             : ! now the CELL stuff..we don't care about REF_CELL since that should
    1046             : ! never change if it's there
    1047             :       CALL mc_parse_text(mc_input_file%text, 1, nlines, "&CELL", .FALSE., &
    1048          40 :                          mc_input_file%cell_row, mc_input_file%cell_column)
    1049             : ! now find the ABC input line after CELL
    1050             :       CALL mc_parse_text(mc_input_file%text, mc_input_file%cell_row + 1, nlines, &
    1051          40 :                          "ABC", .FALSE., abc_row, abc_column)
    1052             : ! is there a &CELL inbetween?  If so, that ABC will be for the ref_cell
    1053             : ! and we need to find the next one
    1054             :       CALL mc_parse_text(mc_input_file%text, mc_input_file%cell_row + 1, abc_row, &
    1055          40 :                          "&CELL", .FALSE., cell_row, cell_column)
    1056          40 :       IF (cell_row == 0) THEN ! nothing in between...we found the correct ABC
    1057          40 :          mc_input_file%cell_row = abc_row
    1058          40 :          mc_input_file%cell_column = abc_column + 4
    1059             :       ELSE
    1060             :          CALL mc_parse_text(mc_input_file%text, abc_row + 1, nlines, &
    1061           0 :                             "ABC", .FALSE., mc_input_file%cell_row, mc_input_file%cell_column)
    1062             :       END IF
    1063          40 :       IF (mc_input_file%cell_row == 0) THEN
    1064           0 :          IF (iw > 0) THEN
    1065           0 :             WRITE (iw, *)
    1066           0 :             WRITE (iw, *) 'File name ', input_file_name
    1067             :          END IF
    1068             :          CALL cp_abort(__LOCATION__, &
    1069           0 :                        'Could not find &CELL section in the input file.  Or could not find the ABC line after it.')
    1070             :       END IF
    1071             : 
    1072             : ! now we need all the MOL_SET NMOLS indices
    1073          40 :       IF (.NOT. lhmc) THEN
    1074          38 :          irep = 0
    1075          38 :          nstart = 1
    1076          68 :          DO
    1077             :             CALL mc_parse_text(mc_input_file%text, nstart, nlines, "&MOLECULE", &
    1078         106 :                                .FALSE., row_number, idum)
    1079         106 :             IF (row_number == 0) EXIT
    1080          68 :             nstart = row_number + 1
    1081          68 :             irep = irep + 1
    1082             :             CALL mc_parse_text(mc_input_file%text, nstart, nlines, "NMOL", &
    1083             :                                .FALSE., mc_input_file%mol_set_nmol_row(irep), &
    1084          68 :                                mc_input_file%mol_set_nmol_column(irep))
    1085          68 :             mc_input_file%mol_set_nmol_column(irep) = mc_input_file%mol_set_nmol_column(irep) + 5
    1086             : 
    1087             :          END DO
    1088          38 :          IF (irep .NE. nmol_types) THEN
    1089           0 :             IF (iw > 0) THEN
    1090           0 :                WRITE (iw, *)
    1091           0 :                WRITE (iw, *) 'File name ', input_file_name
    1092           0 :                WRITE (iw, *) 'Number of molecule types ', nmol_types
    1093           0 :                WRITE (iw, *) '&MOLECULE sections found ', irep
    1094             :             END IF
    1095             :             CALL cp_abort( &
    1096             :                __LOCATION__, &
    1097           0 :                'Did not find MOLECULE sections for every molecule in the simulation (make sure both input files have all types)')
    1098             :          END IF
    1099             :       END IF
    1100             : 
    1101             : ! now let's find the type of force_env...right now, I'm only concerned with
    1102             : ! QS, and Fist, though it should be trivial to add others
    1103             :       CALL mc_parse_text(mc_input_file%text, 1, nlines, &
    1104          40 :                          "METHOD", .FALSE., line_number, idum)
    1105          40 :       READ (mc_input_file%text(line_number), *) cdum, method_name
    1106          40 :       CALL uppercase(method_name)
    1107          80 :       SELECT CASE (TRIM(ADJUSTL(method_name)))
    1108             :       CASE ("FIST")
    1109          34 :          mc_input_file%in_use = use_fist_force
    1110             :       CASE ("QS", "QUICKSTEP")
    1111           6 :          mc_input_file%in_use = use_qs_force
    1112             :       CASE default
    1113          80 :          CPABORT('Cannot determine the type of force_env we are using (check METHOD)')
    1114             :       END SELECT
    1115             : 
    1116          40 :    END SUBROUTINE mc_input_file_create
    1117             : 
    1118             : ! **************************************************************************************************
    1119             : !> \brief destroys (deallocates) things in the mc_input_file_type
    1120             : !> \param mc_input_file the structure that will be released (deallocated)
    1121             : !> \author MJM
    1122             : ! **************************************************************************************************
    1123          40 :    SUBROUTINE mc_input_file_destroy(mc_input_file)
    1124             : 
    1125             :       TYPE(mc_input_file_type), POINTER                  :: mc_input_file
    1126             : 
    1127          40 :       DEALLOCATE (mc_input_file%mol_set_nmol_row)
    1128          40 :       DEALLOCATE (mc_input_file%mol_set_nmol_column)
    1129          40 :       DEALLOCATE (mc_input_file%text)
    1130          40 :       DEALLOCATE (mc_input_file%atom_names_empty)
    1131          40 :       DEALLOCATE (mc_input_file%coordinates_empty)
    1132             : 
    1133          40 :    END SUBROUTINE mc_input_file_destroy
    1134             : 
    1135             : ! **************************************************************************************************
    1136             : !> \brief a basic text parser used to find the row and column numbers of various strings
    1137             : !>      in the input file, to store as indices for when we create a dat_file...
    1138             : !>      returns 0 for the row if nothing is found
    1139             : !> \param text the text to parse
    1140             : !> \param nstart the line to start searching from
    1141             : !> \param nend the line to end searching
    1142             : !> \param string_search the text we're looking for
    1143             : !> \param lend if .TRUE., find the &END that comes after string_search...assumes that
    1144             : !>            the row is the first row with & in the same column as the search string
    1145             : !> \param row_number the row the string is first found on
    1146             : !> \param column_number the column number that the string first appears on
    1147             : !> \param start_row_number ...
    1148             : !> \author MJM
    1149             : ! **************************************************************************************************
    1150         574 :    SUBROUTINE mc_parse_text(text, nstart, nend, string_search, lend, &
    1151             :                             row_number, column_number, start_row_number)
    1152             : 
    1153             :       CHARACTER(LEN=*), DIMENSION(:), INTENT(IN)         :: text
    1154             :       INTEGER, INTENT(IN)                                :: nstart, nend
    1155             :       CHARACTER(LEN=*), INTENT(IN)                       :: string_search
    1156             :       LOGICAL, INTENT(IN)                                :: lend
    1157             :       INTEGER, INTENT(OUT)                               :: row_number, column_number
    1158             :       INTEGER, INTENT(OUT), OPTIONAL                     :: start_row_number
    1159             : 
    1160             :       CHARACTER(default_string_length)                   :: text_temp
    1161             :       INTEGER                                            :: iline, index_string, jline, string_size
    1162             : 
    1163             : ! did not see any string utilities in the code to help, so here I go
    1164             : 
    1165         574 :       row_number = 0
    1166         574 :       column_number = 0
    1167             : 
    1168             : ! how long is our string to search for?
    1169         574 :       string_size = LEN_TRIM(string_search)
    1170       29728 :       whole_file: DO iline = nstart, nend
    1171             : 
    1172       29650 :          index_string = -1
    1173       29650 :          index_string = INDEX(text(iline), string_search(1:string_size))
    1174             : 
    1175       29728 :          IF (index_string .GT. 0) THEN ! we found one
    1176         496 :             IF (.NOT. lend) THEN
    1177         336 :                row_number = iline
    1178         336 :                column_number = index_string
    1179             :             ELSE
    1180         160 :                IF (PRESENT(start_row_number)) start_row_number = iline
    1181         160 :                column_number = index_string
    1182       12034 :                DO jline = iline + 1, nend
    1183             : ! now we find the &END that matches up with this one...
    1184             : ! I need proper indentation because I'm not very smart
    1185       12034 :                   text_temp = text(jline)
    1186       12034 :                   IF (text_temp(column_number:column_number) .EQ. "&") THEN
    1187         160 :                      row_number = jline
    1188         160 :                      EXIT
    1189             :                   END IF
    1190             :                END DO
    1191             :             END IF
    1192             :             EXIT whole_file
    1193             :          END IF
    1194             :       END DO whole_file
    1195             : 
    1196         574 :    END SUBROUTINE mc_parse_text
    1197             : 
    1198             : ! **************************************************************************************************
    1199             : !> \brief reads in the Monte Carlo simulation parameters from an input file
    1200             : !> \param mc_par the structure that will store the parameters
    1201             : !> \param para_env ...
    1202             : !> \param globenv the global environment for the simulation
    1203             : !> \param input_file_name the name of the input_file
    1204             : !> \param input_file the structure that contains all the keywords in the input file
    1205             : !> \param force_env_section used to grab the type of force_env
    1206             : !> \author MJM
    1207             : ! **************************************************************************************************
    1208          78 :    SUBROUTINE read_mc_section(mc_par, para_env, globenv, input_file_name, input_file, force_env_section)
    1209             : 
    1210             :       TYPE(mc_simpar_type), POINTER                      :: mc_par
    1211             :       TYPE(mp_para_env_type), POINTER                    :: para_env
    1212             :       TYPE(global_environment_type), POINTER             :: globenv
    1213             :       CHARACTER(LEN=*), INTENT(IN)                       :: input_file_name
    1214             :       TYPE(section_vals_type), POINTER                   :: input_file, force_env_section
    1215             : 
    1216             :       CHARACTER(len=*), PARAMETER                        :: routineN = 'read_mc_section'
    1217             : 
    1218             :       CHARACTER(LEN=5)                                   :: box_string, molecule_string, &
    1219             :                                                             tab_box_string, tab_string, &
    1220             :                                                             tab_string_int
    1221             :       CHARACTER(LEN=default_string_length)               :: format_box_string, format_string, &
    1222             :                                                             format_string_int
    1223             :       INTEGER                                            :: handle, ia, ie, imol, itype, iw, &
    1224             :                                                             method_name_id, nmol_types, stop_num
    1225          26 :       INTEGER, DIMENSION(:), POINTER                     :: temp_i_array
    1226          26 :       REAL(dp), DIMENSION(:), POINTER                    :: temp_r_array
    1227             :       TYPE(section_vals_type), POINTER                   :: mc_section
    1228             : 
    1229             : ! begin the timing of the subroutine
    1230             : 
    1231           0 :       CPASSERT(ASSOCIATED(input_file))
    1232             : 
    1233          26 :       CALL timeset(routineN, handle)
    1234             : 
    1235          26 :       NULLIFY (mc_section)
    1236             :       mc_section => section_vals_get_subs_vals(input_file, &
    1237          26 :                                                "MOTION%MC")
    1238             : 
    1239             : ! need the input file sturcutre that we're reading from for when we make
    1240             : ! dat files
    1241          26 :       mc_par%input_file => input_file
    1242             : 
    1243             : ! set the ionode and mepos
    1244          26 :       mc_par%ionode = para_env%is_source()
    1245          26 :       mc_par%group = para_env
    1246          26 :       mc_par%source = para_env%source
    1247             : 
    1248             : ! for convenience
    1249          26 :       nmol_types = mc_par%mc_molecule_info%nmol_types
    1250             : 
    1251             : !..defaults...most are set in input_cp2k_motion
    1252          26 :       mc_par%nstart = 0
    1253          26 :       CALL section_vals_val_get(force_env_section, "METHOD", i_val=method_name_id)
    1254          20 :       SELECT CASE (method_name_id)
    1255             :       CASE (do_fist)
    1256          20 :          mc_par%iprint = 100
    1257             :       CASE (do_qs)
    1258          26 :          mc_par%iprint = 1
    1259             :       END SELECT
    1260             : 
    1261          26 :       iw = cp_logger_get_default_io_unit()
    1262          26 :       IF (iw > 0) WRITE (iw, *)
    1263             : 
    1264             : !..filenames
    1265          26 :       mc_par%program = input_file_name
    1266          26 :       CALL xstring(mc_par%program, ia, ie)
    1267          26 :       mc_par%coords_file = mc_par%program(ia:ie)//'.coordinates'
    1268          26 :       mc_par%molecules_file = mc_par%program(ia:ie)//'.molecules'
    1269          26 :       mc_par%moves_file = mc_par%program(ia:ie)//'.moves'
    1270          26 :       mc_par%energy_file = mc_par%program(ia:ie)//'.energy'
    1271          26 :       mc_par%cell_file = mc_par%program(ia:ie)//'.cell'
    1272             :       mc_par%displacement_file = mc_par%program(ia:ie) &
    1273          26 :                                  //'.max_displacements'
    1274          26 :       mc_par%data_file = mc_par%program(ia:ie)//'.data'
    1275          26 :       stop_num = ie - 3
    1276          26 :       mc_par%dat_file = mc_par%program(ia:stop_num)//'dat'
    1277             : 
    1278             : ! set them into the input parameter structure as the new defaults
    1279             :       CALL section_vals_val_set(mc_section, "COORDINATE_FILE_NAME", &
    1280          26 :                                 c_val=mc_par%coords_file)
    1281             :       CALL section_vals_val_set(mc_section, "DATA_FILE_NAME", &
    1282          26 :                                 c_val=mc_par%data_file)
    1283             :       CALL section_vals_val_set(mc_section, "CELL_FILE_NAME", &
    1284          26 :                                 c_val=mc_par%cell_file)
    1285             :       CALL section_vals_val_set(mc_section, "MAX_DISP_FILE_NAME", &
    1286          26 :                                 c_val=mc_par%displacement_file)
    1287             :       CALL section_vals_val_set(mc_section, "MOVES_FILE_NAME", &
    1288          26 :                                 c_val=mc_par%moves_file)
    1289             :       CALL section_vals_val_set(mc_section, "MOLECULES_FILE_NAME", &
    1290          26 :                                 c_val=mc_par%molecules_file)
    1291             :       CALL section_vals_val_set(mc_section, "ENERGY_FILE_NAME", &
    1292          26 :                                 c_val=mc_par%energy_file)
    1293             : 
    1294             : ! grab the FFT library name and print level...this is used for writing the dat file
    1295             : ! and hopefully will be changed
    1296          26 :       mc_par%fft_lib = globenv%default_fft_library
    1297             : 
    1298             : ! get all the move probabilities first...if we are not doing certain types of moves, we don't care
    1299             : ! if the values for those move parameters are strange
    1300             : 
    1301             : ! find out if we're only doing HMC moves...we can ignore a lot of extra information
    1302             : ! then, which would ordinarily be cause for concern
    1303          26 :       CALL section_vals_val_get(mc_section, "MOVE_PROBABILITIES%PMHMC", r_val=mc_par%pmhmc)
    1304          26 :       CALL section_vals_val_get(mc_section, "MOVE_PROBABILITIES%PMSWAP", r_val=mc_par%pmswap)
    1305          26 :       CALL section_vals_val_get(mc_section, "MOVE_PROBABILITIES%PMVOLUME", r_val=mc_par%pmvolume)
    1306          26 :       CALL section_vals_val_get(mc_section, "MOVE_PROBABILITIES%PMAVBMC", r_val=mc_par%pmavbmc)
    1307          26 :       CALL section_vals_val_get(mc_section, "MOVE_PROBABILITIES%PMTRANS", r_val=mc_par%pmtrans)
    1308          26 :       CALL section_vals_val_get(mc_section, "MOVE_PROBABILITIES%PMTRAION", r_val=mc_par%pmtraion)
    1309          26 :       CALL section_vals_val_get(mc_section, "MOVE_PROBABILITIES%PMCLTRANS", r_val=mc_par%pmcltrans)
    1310             : 
    1311             :       ! first, grab all the integer values
    1312          26 :       CALL section_vals_val_get(mc_section, "NSTEP", i_val=mc_par%nstep)
    1313          26 :       CALL section_vals_val_get(mc_section, "NMOVES", i_val=mc_par%nmoves)
    1314          26 :       CALL section_vals_val_get(mc_section, "NSWAPMOVES", i_val=mc_par%nswapmoves)
    1315             :       CALL section_vals_val_get(mc_section, "MOVE_UPDATES%IUPVOLUME", &
    1316          26 :                                 i_val=mc_par%iupvolume)
    1317          26 :       CALL section_vals_val_get(mc_section, "NVIRIAL", i_val=mc_par%nvirial)
    1318             :       CALL section_vals_val_get(mc_section, "MOVE_UPDATES%IUPTRANS", &
    1319          26 :                                 i_val=mc_par%iuptrans)
    1320             :       CALL section_vals_val_get(mc_section, "MOVE_UPDATES%IUPCLTRANS", &
    1321          26 :                                 i_val=mc_par%iupcltrans)
    1322          26 :       CALL section_vals_val_get(mc_section, "IPRINT", i_val=mc_par%iprint)
    1323             : ! now an integer array
    1324          26 :       CALL section_vals_val_get(mc_section, "AVBMC%AVBMC_ATOM", i_vals=temp_i_array)
    1325             : 
    1326          26 :       IF (mc_par%pmhmc - mc_par%pmswap >= 1.0_dp .AND. mc_par%pmhmc == 1.0_dp) THEN
    1327           2 :          mc_par%lhmc = .TRUE.
    1328             :       ELSE
    1329          24 :          mc_par%lhmc = .FALSE.
    1330             :       END IF
    1331             : 
    1332          26 :       IF (.NOT. mc_par%lhmc) THEN
    1333          24 :          IF (SIZE(temp_i_array) .NE. nmol_types) THEN
    1334           0 :             CPABORT('AVBMC_ATOM must have as many values as there are molecule types.')
    1335             :          END IF
    1336             :       END IF
    1337          68 :       DO imol = 1, SIZE(temp_i_array)
    1338          68 :          mc_par%avbmc_atom(imol) = temp_i_array(imol)
    1339             :       END DO
    1340             : 
    1341             : ! now the real values
    1342          26 :       CALL section_vals_val_get(mc_section, "PRESSURE", r_val=mc_par%pressure)
    1343          26 :       CALL section_vals_val_get(mc_section, "TEMPERATURE", r_val=mc_par%temperature)
    1344          26 :       CALL section_vals_val_get(mc_section, "RCLUS", r_val=mc_par%rclus)
    1345             :       CALL section_vals_val_get(mc_section, "MOVE_PROBABILITIES%BOX_PROBABILITIES%PMCLUS_BOX", &
    1346          26 :                                 r_val=mc_par%pmclus_box)
    1347             :       CALL section_vals_val_get(mc_section, "MOVE_PROBABILITIES%BOX_PROBABILITIES%PMHMC_BOX", &
    1348          26 :                                 r_val=mc_par%pmhmc_box)
    1349             :       CALL section_vals_val_get(mc_section, "MOVE_PROBABILITIES%BOX_PROBABILITIES%PMVOL_BOX", &
    1350          26 :                                 r_val=mc_par%pmvol_box)
    1351          26 :       CALL section_vals_val_get(mc_section, "DISCRETE_STEP", r_val=mc_par%discrete_step)
    1352             :       CALL section_vals_val_get(mc_section, "MAX_DISPLACEMENTS%BOX_DISPLACEMENTS%RMVOLUME", &
    1353          26 :                                 r_val=mc_par%rmvolume)
    1354             :       CALL section_vals_val_get(mc_section, "MAX_DISPLACEMENTS%BOX_DISPLACEMENTS%RMCLTRANS", &
    1355          26 :                                 r_val=mc_par%rmcltrans)
    1356             : 
    1357             : ! finally the character values
    1358          26 :       CALL section_vals_val_get(mc_section, "ENSEMBLE", c_val=mc_par%ensemble)
    1359          26 :       CALL section_vals_val_get(mc_section, "RESTART_FILE_NAME", c_val=mc_par%restart_file_name)
    1360          26 :       CALL section_vals_val_get(mc_section, "COORDINATE_FILE_NAME", c_val=mc_par%coords_file)
    1361          26 :       CALL section_vals_val_get(mc_section, "ENERGY_FILE_NAME", c_val=mc_par%energy_file)
    1362          26 :       CALL section_vals_val_get(mc_section, "MOVES_FILE_NAME", c_val=mc_par%moves_file)
    1363          26 :       CALL section_vals_val_get(mc_section, "MOLECULES_FILE_NAME", c_val=mc_par%molecules_file)
    1364          26 :       CALL section_vals_val_get(mc_section, "CELL_FILE_NAME", c_val=mc_par%cell_file)
    1365          26 :       CALL section_vals_val_get(mc_section, "DATA_FILE_NAME", c_val=mc_par%data_file)
    1366          26 :       CALL section_vals_val_get(mc_section, "MAX_DISP_FILE_NAME", c_val=mc_par%displacement_file)
    1367          26 :       CALL section_vals_val_get(mc_section, "BOX2_FILE_NAME", c_val=mc_par%box2_file)
    1368             : 
    1369             : ! set the values of the arrays...if we just point, we have problems when we start fooling around
    1370             : ! with releasing force_envs and wonky values get set (despite that these are private)
    1371          26 :       IF (mc_par%ensemble == "VIRIAL") THEN
    1372           2 :          CALL section_vals_val_get(mc_section, "VIRIAL_TEMPS", r_vals=temp_r_array)
    1373             : ! yes, I'm allocating here...I cannot find a better place to do it, though
    1374           6 :          ALLOCATE (mc_par%virial_temps(1:SIZE(temp_r_array)))
    1375           6 :          DO imol = 1, SIZE(temp_r_array)
    1376           6 :             mc_par%virial_temps(imol) = temp_r_array(imol)
    1377             :          END DO
    1378             :       END IF
    1379             : ! all of these arrays should have one value for each type of molecule...so check that
    1380          26 :       CALL section_vals_val_get(mc_section, "AVBMC%AVBMC_RMIN", r_vals=temp_r_array)
    1381          26 :       IF (.NOT. mc_par%lhmc) THEN
    1382          24 :          IF (SIZE(temp_r_array) .NE. nmol_types) THEN
    1383           0 :             CPABORT('AVBMC_RMIN must have as many values as there are molecule types.')
    1384             :          END IF
    1385             :       END IF
    1386          68 :       DO imol = 1, SIZE(temp_r_array)
    1387          68 :          mc_par%avbmc_rmin(imol) = temp_r_array(imol)
    1388             :       END DO
    1389          26 :       CALL section_vals_val_get(mc_section, "AVBMC%AVBMC_RMAX", r_vals=temp_r_array)
    1390          26 :       IF (.NOT. mc_par%lhmc) THEN
    1391          24 :          IF (SIZE(temp_r_array) .NE. nmol_types) THEN
    1392           0 :             CPABORT('AVBMC_RMAXL must have as many values as there are molecule types.')
    1393             :          END IF
    1394             :       END IF
    1395          68 :       DO imol = 1, SIZE(temp_r_array)
    1396          68 :          mc_par%avbmc_rmax(imol) = temp_r_array(imol)
    1397             :       END DO
    1398          26 :       CALL section_vals_val_get(mc_section, "AVBMC%PBIAS", r_vals=temp_r_array)
    1399          26 :       IF (.NOT. mc_par%lhmc) THEN
    1400          24 :          IF (SIZE(temp_r_array) .NE. nmol_types) THEN
    1401           0 :             CPABORT('PBIAS must have as many values as there are molecule types.')
    1402             :          END IF
    1403             :       END IF
    1404          68 :       DO imol = 1, SIZE(temp_r_array)
    1405          68 :          mc_par%pbias(imol) = temp_r_array(imol)
    1406             :       END DO
    1407             :       CALL section_vals_val_get(mc_section, "MOVE_PROBABILITIES%MOL_PROBABILITIES%PMAVBMC_MOL", &
    1408          26 :                                 r_vals=temp_r_array)
    1409          26 :       IF (.NOT. mc_par%lhmc) THEN
    1410          24 :          IF (SIZE(temp_r_array) .NE. nmol_types) THEN
    1411           0 :             CPABORT('PMAVBMC_MOL must have as many values as there are molecule types.')
    1412             :          END IF
    1413             :       END IF
    1414          68 :       DO imol = 1, SIZE(temp_r_array)
    1415          68 :          mc_par%pmavbmc_mol(imol) = temp_r_array(imol)
    1416             :       END DO
    1417          26 :       CALL section_vals_val_get(mc_section, "ETA", r_vals=temp_r_array)
    1418          26 :       IF (.NOT. mc_par%lhmc) THEN
    1419          24 :          IF (SIZE(temp_r_array) .NE. nmol_types) THEN
    1420           0 :             CPABORT('ETA must have as many values as there are molecule types.')
    1421             :          END IF
    1422             :       END IF
    1423          68 :       DO imol = 1, SIZE(temp_r_array)
    1424          68 :          mc_par%eta(imol) = temp_r_array(imol)
    1425             :       END DO
    1426             :       CALL section_vals_val_get(mc_section, "MAX_DISPLACEMENTS%MOL_DISPLACEMENTS%RMBOND", &
    1427          26 :                                 r_vals=temp_r_array)
    1428          26 :       IF (.NOT. mc_par%lhmc) THEN
    1429          24 :          IF (SIZE(temp_r_array) .NE. nmol_types) THEN
    1430           0 :             CPABORT('RMBOND must have as many values as there are molecule types.')
    1431             :          END IF
    1432             :       END IF
    1433          68 :       DO imol = 1, SIZE(temp_r_array)
    1434          68 :          mc_par%rmbond(imol) = temp_r_array(imol)
    1435             :       END DO
    1436             :       CALL section_vals_val_get(mc_section, "MAX_DISPLACEMENTS%MOL_DISPLACEMENTS%RMANGLE", &
    1437          26 :                                 r_vals=temp_r_array)
    1438          26 :       IF (.NOT. mc_par%lhmc) THEN
    1439          24 :          IF (SIZE(temp_r_array) .NE. nmol_types) THEN
    1440           0 :             CPABORT('RMANGLE must have as many values as there are molecule types.')
    1441             :          END IF
    1442             :       END IF
    1443          68 :       DO imol = 1, SIZE(temp_r_array)
    1444          68 :          mc_par%rmangle(imol) = temp_r_array(imol)
    1445             :       END DO
    1446             :       CALL section_vals_val_get(mc_section, "MAX_DISPLACEMENTS%MOL_DISPLACEMENTS%RMDIHEDRAL", &
    1447          26 :                                 r_vals=temp_r_array)
    1448          26 :       IF (.NOT. mc_par%lhmc) THEN
    1449          24 :          IF (SIZE(temp_r_array) .NE. nmol_types) THEN
    1450           0 :             CPABORT('RMDIHEDRAL must have as many values as there are molecule types.')
    1451             :          END IF
    1452             :       END IF
    1453          68 :       DO imol = 1, SIZE(temp_r_array)
    1454          68 :          mc_par%rmdihedral(imol) = temp_r_array(imol)
    1455             :       END DO
    1456             :       CALL section_vals_val_get(mc_section, "MAX_DISPLACEMENTS%MOL_DISPLACEMENTS%RMROT", &
    1457          26 :                                 r_vals=temp_r_array)
    1458          26 :       IF (.NOT. mc_par%lhmc) THEN
    1459          24 :          IF (SIZE(temp_r_array) .NE. nmol_types) THEN
    1460           0 :             CPABORT('RMROT must have as many values as there are molecule types.')
    1461             :          END IF
    1462             :       END IF
    1463          68 :       DO imol = 1, SIZE(temp_r_array)
    1464          68 :          mc_par%rmrot(imol) = temp_r_array(imol)
    1465             :       END DO
    1466             :       CALL section_vals_val_get(mc_section, "MAX_DISPLACEMENTS%MOL_DISPLACEMENTS%RMTRANS", &
    1467          26 :                                 r_vals=temp_r_array)
    1468          26 :       IF (.NOT. mc_par%lhmc) THEN
    1469          24 :          IF (SIZE(temp_r_array) .NE. nmol_types) THEN
    1470           0 :             CPABORT('RMTRANS must have as many values as there are molecule types.')
    1471             :          END IF
    1472             :       END IF
    1473          68 :       DO imol = 1, SIZE(temp_r_array)
    1474          68 :          mc_par%rmtrans(imol) = temp_r_array(imol)
    1475             :       END DO
    1476             : 
    1477             :       CALL section_vals_val_get(mc_section, "MOVE_PROBABILITIES%MOL_PROBABILITIES%PMTRAION_MOL", &
    1478          26 :                                 r_vals=temp_r_array)
    1479          26 :       IF (.NOT. mc_par%lhmc) THEN
    1480          24 :          IF (SIZE(temp_r_array) .NE. nmol_types) THEN
    1481           0 :             CPABORT('PMTRAION_MOL must have as many values as there are molecule types.')
    1482             :          END IF
    1483             :       END IF
    1484          68 :       DO imol = 1, SIZE(temp_r_array)
    1485          68 :          mc_par%pmtraion_mol(imol) = temp_r_array(imol)
    1486             :       END DO
    1487             : 
    1488             :       CALL section_vals_val_get(mc_section, "MOVE_PROBABILITIES%MOL_PROBABILITIES%PMTRANS_MOL", &
    1489          26 :                                 r_vals=temp_r_array)
    1490          26 :       IF (.NOT. mc_par%lhmc) THEN
    1491          24 :          IF (SIZE(temp_r_array) .NE. nmol_types) THEN
    1492           0 :             CPABORT('PMTRANS_MOL must have as many values as there are molecule types.')
    1493             :          END IF
    1494             :       END IF
    1495          68 :       DO imol = 1, SIZE(temp_r_array)
    1496          68 :          mc_par%pmtrans_mol(imol) = temp_r_array(imol)
    1497             :       END DO
    1498             : 
    1499             :       CALL section_vals_val_get(mc_section, "MOVE_PROBABILITIES%MOL_PROBABILITIES%PMROT_MOL", &
    1500          26 :                                 r_vals=temp_r_array)
    1501          26 :       IF (.NOT. mc_par%lhmc) THEN
    1502          24 :          IF (SIZE(temp_r_array) .NE. nmol_types) THEN
    1503           0 :             CPABORT('PMROT_MOL must have as many values as there are molecule types.')
    1504             :          END IF
    1505             :       END IF
    1506          68 :       DO imol = 1, SIZE(temp_r_array)
    1507          68 :          mc_par%pmrot_mol(imol) = temp_r_array(imol)
    1508             :       END DO
    1509             : 
    1510             :       CALL section_vals_val_get(mc_section, "MOVE_PROBABILITIES%MOL_PROBABILITIES%PMSWAP_MOL", &
    1511          26 :                                 r_vals=temp_r_array)
    1512          26 :       IF (.NOT. mc_par%lhmc) THEN
    1513          24 :          IF (SIZE(temp_r_array) .NE. nmol_types) THEN
    1514           0 :             CPABORT('PMSWAP_MOL must have as many values as there are molecule types.')
    1515             :          END IF
    1516             :       END IF
    1517          68 :       DO imol = 1, SIZE(temp_r_array)
    1518          68 :          mc_par%pmswap_mol(imol) = temp_r_array(imol)
    1519             :       END DO
    1520             : 
    1521             : ! now some logical values
    1522          26 :       CALL section_vals_val_get(mc_section, "LBIAS", l_val=mc_par%lbias)
    1523          26 :       CALL section_vals_val_get(mc_section, "LDISCRETE", l_val=mc_par%ldiscrete)
    1524          26 :       CALL section_vals_val_get(mc_section, "LSTOP", l_val=mc_par%lstop)
    1525          26 :       CALL section_vals_val_get(mc_section, "RESTART", l_val=mc_par%lrestart)
    1526          26 :       CALL section_vals_val_get(mc_section, "LBIAS", l_val=mc_par%lbias)
    1527             : 
    1528             : !..end of parsing the input section
    1529             : 
    1530             : !..write some information to output
    1531          26 :       IF (iw > 0) THEN
    1532          13 :          WRITE (box_string, '(I2)') mc_par%mc_molecule_info%nboxes
    1533          13 :          WRITE (molecule_string, '(I2)') mc_par%mc_molecule_info%nmol_types
    1534          13 :          WRITE (tab_string, '(I4)') 81 - 10*mc_par%mc_molecule_info%nmol_types
    1535          13 :          WRITE (tab_box_string, '(I4)') 81 - 10*mc_par%mc_molecule_info%nboxes
    1536          13 :          WRITE (tab_string_int, '(I4)') 81 - 5*mc_par%mc_molecule_info%nmol_types
    1537          13 :          format_string = "(A,T"//TRIM(ADJUSTL(tab_string))//","//TRIM(ADJUSTL(molecule_string))//"(2X,F8.4))"
    1538          13 :          format_box_string = "(A,T"//TRIM(ADJUSTL(tab_box_string))//","//TRIM(ADJUSTL(box_string))//"(2X,F8.4))"
    1539          13 :          format_string_int = "(A,T"//TRIM(ADJUSTL(tab_string))//","//TRIM(ADJUSTL(molecule_string))//"(I3,2X))"
    1540          13 :          WRITE (iw, '( A )') ' MC| Monte Carlo Protocol '
    1541          13 :          WRITE (iw, '( A,T71,I10 )') ' MC| total number of steps ', &
    1542          26 :             mc_par%nstep
    1543          13 :          WRITE (iw, '( A,T71,F10.3 )') ' MC| pmvolume ', &
    1544          26 :             mc_par%pmvolume
    1545          13 :          WRITE (iw, '( A,T71,F10.3 )') ' MC| pmvol_box ', &
    1546          26 :             mc_par%pmvol_box
    1547          13 :          WRITE (iw, '( A,T71,F10.3 )') ' MC| pmclus_box ', &
    1548          26 :             mc_par%pmclus_box
    1549          13 :          WRITE (iw, '( A,T71,F10.3 )') ' MC| pmhmc ', &
    1550          26 :             mc_par%pmhmc
    1551          13 :          WRITE (iw, '( A,T71,F10.3 )') ' MC| pmhmc_box ', &
    1552          26 :             mc_par%pmhmc_box
    1553          13 :          WRITE (iw, '( A,T71,F10.3 )') ' MC| pmswap ', &
    1554          26 :             mc_par%pmswap
    1555          13 :          WRITE (iw, '( A,T71,F10.3 )') ' MC| pmavbmc ', &
    1556          26 :             mc_par%pmavbmc
    1557          13 :          WRITE (iw, '( A,T71,F10.3 )') ' MC| pmtraion ', &
    1558          26 :             mc_par%pmtraion
    1559          13 :          WRITE (iw, '( A,T71,F10.3 )') ' MC| pmtrans ', &
    1560          26 :             mc_par%pmtrans
    1561          13 :          WRITE (iw, '( A,T71,F10.3 )') ' MC| pmcltrans ', &
    1562          26 :             mc_par%pmcltrans
    1563          13 :          WRITE (iw, '( A,T71,I10 )') ' MC| iupvolume ', &
    1564          26 :             mc_par%iupvolume
    1565          13 :          WRITE (iw, '( A,T71,I10 )') ' MC| nvirial ', &
    1566          26 :             mc_par%nvirial
    1567          13 :          WRITE (iw, '( A,T71,I10 )') ' MC| iuptrans ', &
    1568          26 :             mc_par%iuptrans
    1569          13 :          WRITE (iw, '( A,T71,I10 )') ' MC| iupcltrans ', &
    1570          26 :             mc_par%iupcltrans
    1571          13 :          WRITE (iw, '( A,T71,I10 )') ' MC| iprint ', &
    1572          26 :             mc_par%iprint
    1573          13 :          WRITE (iw, '( A,T61,A20 )') ' MC| ensemble ', &
    1574          26 :             ADJUSTR(mc_par%ensemble)
    1575             : ! format string may not be valid if all the molecules are atomic,
    1576             : ! like in HMC
    1577          13 :          IF (.NOT. mc_par%lhmc) THEN
    1578          12 :             WRITE (iw, format_string) ' MC| pmswap_mol ', &
    1579          44 :                mc_par%pmswap_mol
    1580          12 :             WRITE (iw, format_string) ' MC| pmavbmc_mol ', &
    1581          44 :                mc_par%pmavbmc_mol
    1582          12 :             WRITE (iw, format_string) ' MC| pbias ', &
    1583          44 :                mc_par%pbias
    1584          12 :             WRITE (iw, format_string) ' MC| pmtraion_mol ', &
    1585          44 :                mc_par%pmtraion_mol
    1586          12 :             WRITE (iw, format_string) ' MC| pmtrans_mol ', &
    1587          44 :                mc_par%pmtrans_mol
    1588          12 :             WRITE (iw, format_string) ' MC| pmrot_mol ', &
    1589          44 :                mc_par%pmrot_mol
    1590          12 :             WRITE (iw, format_string) ' MC| eta [K]', &
    1591          44 :                mc_par%eta
    1592          12 :             WRITE (iw, format_string) ' MC| rmbond [angstroms]', &
    1593          44 :                mc_par%rmbond
    1594          12 :             WRITE (iw, format_string) ' MC| rmangle [degrees]', &
    1595          44 :                mc_par%rmangle
    1596          12 :             WRITE (iw, format_string) ' MC| rmdihedral [degrees]', &
    1597          44 :                mc_par%rmdihedral
    1598          12 :             WRITE (iw, format_string) ' MC| rmtrans [angstroms]', &
    1599          44 :                mc_par%rmtrans
    1600          12 :             WRITE (iw, format_string) ' MC| rmcltrans [angstroms]', &
    1601          24 :                mc_par%rmcltrans
    1602          12 :             WRITE (iw, format_string) ' MC| rmrot [degrees]', &
    1603          44 :                mc_par%rmrot
    1604          12 :             WRITE (iw, format_string_int) ' MC| AVBMC target atom ', &
    1605          44 :                mc_par%avbmc_atom
    1606          12 :             WRITE (iw, format_string) ' MC| AVBMC inner cutoff [ang]', &
    1607          44 :                mc_par%avbmc_rmin
    1608          12 :             WRITE (iw, format_string) ' MC| AVBMC outer cutoff [ang]', &
    1609          44 :                mc_par%avbmc_rmax
    1610             :          END IF
    1611          13 :          IF (mc_par%ensemble .EQ. 'GEMC-NVT') THEN
    1612           0 :             WRITE (iw, '( A,T58,A)') ' MC| Box 2 file', &
    1613           0 :                TRIM(mc_par%box2_file)
    1614             :          END IF
    1615          13 :          WRITE (iw, '( A,T58,A )') ' MC| Name of restart file:', &
    1616          26 :             TRIM(mc_par%restart_file_name)
    1617          13 :          WRITE (iw, '( A,A,T44,A )') ' MC| Name of output ', &
    1618          13 :             'coordinate file:', &
    1619          26 :             TRIM(mc_par%coords_file)
    1620          13 :          WRITE (iw, '( A,T44,A )') ' MC| Name of output data file:', &
    1621          26 :             TRIM(mc_par%data_file)
    1622          13 :          WRITE (iw, '( A,A,T44,A )') ' MC| Name of output ', &
    1623          13 :             'molecules file:', &
    1624          26 :             TRIM(mc_par%molecules_file)
    1625          13 :          WRITE (iw, '( A,T44,A )') ' MC| Name of output moves file:', &
    1626          26 :             TRIM(mc_par%moves_file)
    1627          13 :          WRITE (iw, '( A,T44,A )') ' MC| Name of output energy file:', &
    1628          26 :             TRIM(mc_par%energy_file)
    1629          13 :          WRITE (iw, '( A,T44,A )') ' MC| Name of output cell file:', &
    1630          26 :             TRIM(mc_par%cell_file)
    1631          13 :          WRITE (iw, '( A,A,T44,A )') ' MC| Name of output', &
    1632          13 :             ' displacement file:', &
    1633          26 :             TRIM(mc_par%displacement_file)
    1634          13 :          IF (mc_par%ldiscrete) THEN
    1635           0 :             WRITE (iw, '(A,A,T71,F10.3)') ' MC| discrete step size', &
    1636           0 :                '[angstroms]', &
    1637           0 :                mc_par%discrete_step
    1638             :          ELSE
    1639          13 :             WRITE (iw, '( A,A,T71,F10.3 )') ' MC| rmvolume ', &
    1640          13 :                '[cubic angstroms]', &
    1641          26 :                mc_par%rmvolume
    1642             :          END IF
    1643          13 :          WRITE (iw, '( A,T71,F10.2 )') ' MC| Temperature [K] ', &
    1644          26 :             mc_par%temperature
    1645          13 :          WRITE (iw, '( A,T71,F10.5 )') ' MC| Pressure [bar] ', &
    1646          26 :             mc_par%pressure
    1647          13 :          WRITE (iw, '( A,T71,F10.5 )') ' MC| Rclus [ang] ', &
    1648          26 :             mc_par%rclus
    1649          13 :          IF (mc_par%lrestart) THEN
    1650           1 :             WRITE (iw, '(A,A)') ' MC| Initial data will be read from a', &
    1651           2 :                ' restart file.'
    1652             :          END IF
    1653          13 :          IF (mc_par%lbias) THEN
    1654           7 :             WRITE (iw, '(A)') ' MC| The moves will be biased.'
    1655             :          ELSE
    1656           6 :             WRITE (iw, '(A)') ' MC| The moves will not be biased,'
    1657             :          END IF
    1658          13 :          IF (mc_par%nmoves .EQ. 1) THEN
    1659          10 :             WRITE (iw, '(A,A)') ' MC| A full energy calculation ', &
    1660          20 :                'will be done at every step.'
    1661             :          ELSE
    1662           3 :             WRITE (iw, '(A,I4,A,A)') ' MC| ', mc_par%nmoves, &
    1663           3 :                ' moves will be attempted ', &
    1664           6 :                'before a Quickstep energy calculation'
    1665           3 :             WRITE (iw, '(A)') ' MC|      takes place.'
    1666             :          END IF
    1667             : 
    1668          13 :          WRITE (iw, '(A,I4,A,A)') ' MC| ', mc_par%nswapmoves, &
    1669          13 :             ' swap insertions will be attempted ', &
    1670          26 :             'per molecular swap move'
    1671             : 
    1672          13 :          IF (mc_par%lhmc) THEN
    1673           1 :             WRITE (iw, '(A)') '********************************************************'
    1674           1 :             WRITE (iw, '(A)') '************** ONLY DOING HYBRID MONTE CARLO MOVES **************************'
    1675           1 :             WRITE (iw, '(A)') '********************************************************'
    1676             : 
    1677             :          END IF
    1678             :       END IF
    1679             : 
    1680             : ! figure out what beta (1/kT) is in atomic units (1/Hartree)
    1681          26 :       mc_par%BETA = 1/mc_par%temperature/boltzmann*joule
    1682             : 
    1683             :       ! 0.9_dp is to avoid overflow or underflow
    1684          26 :       mc_par%exp_max_val = 0.9_dp*LOG(HUGE(0.0_dp))
    1685          26 :       mc_par%exp_min_val = 0.9_dp*LOG(TINY(0.0_dp))
    1686          26 :       mc_par%max_val = EXP(mc_par%exp_max_val)
    1687          26 :       mc_par%min_val = 0.0_dp
    1688             : 
    1689             : ! convert from bar to a.u.
    1690          26 :       mc_par%pressure = cp_unit_to_cp2k(mc_par%pressure, "bar")
    1691          26 :       mc_par%rclus = cp_unit_to_cp2k(mc_par%rclus, "angstrom")
    1692             : ! convert from angstrom to a.u.
    1693          68 :       DO itype = 1, mc_par%mc_molecule_info%nmol_types
    1694             : ! convert from Kelvin to a.u.
    1695             : !         mc_par % eta = mc_par%eta(itype) * boltzmann / joule
    1696             : ! convert from degrees to radians
    1697          42 :          mc_par%rmrot(itype) = mc_par%rmrot(itype)/180.0e0_dp*pi
    1698          42 :          mc_par%rmangle(itype) = mc_par%rmangle(itype)/180.0e0_dp*pi
    1699          42 :          mc_par%rmdihedral(itype) = mc_par%rmdihedral(itype)/180.0e0_dp*pi
    1700          42 :          mc_par%rmtrans(itype) = cp_unit_to_cp2k(mc_par%rmtrans(itype), "angstrom")
    1701          42 :          mc_par%rmbond(itype) = cp_unit_to_cp2k(mc_par%rmbond(itype), "angstrom")
    1702          42 :          mc_par%eta(itype) = cp_unit_to_cp2k(mc_par%eta(itype), "K_e")
    1703          42 :          mc_par%avbmc_rmin(itype) = cp_unit_to_cp2k(mc_par%avbmc_rmin(itype), "angstrom")
    1704          68 :          mc_par%avbmc_rmax(itype) = cp_unit_to_cp2k(mc_par%avbmc_rmax(itype), "angstrom")
    1705             :       END DO
    1706          26 :       mc_par%rmvolume = cp_unit_to_cp2k(mc_par%rmvolume, "angstrom^3")
    1707          26 :       mc_par%rmcltrans = cp_unit_to_cp2k(mc_par%rmcltrans, "angstrom")
    1708          26 :       mc_par%discrete_step = cp_unit_to_cp2k(mc_par%discrete_step, "angstrom")
    1709             : 
    1710             : ! end the timing
    1711          26 :       CALL timestop(handle)
    1712             : 
    1713          26 :    END SUBROUTINE read_mc_section
    1714             : 
    1715             : ! **************************************************************************************************
    1716             : !> \brief finds the largest interaction cutoff value in a classical simulation
    1717             : !>      so we know the smallest size we can make the box in a volume move
    1718             : !> \param mc_par the structure that will store the parameters
    1719             : !> \param force_env the force environment that we'll grab the rcut parameter
    1720             : !>                   out of
    1721             : !> \param lterminate set to .TRUE. if one of the sides of the box is
    1722             : !>            less than twice the cutoff
    1723             : !>
    1724             : !>    Suitable for parallel.
    1725             : !> \author MJM
    1726             : ! **************************************************************************************************
    1727          14 :    SUBROUTINE find_mc_rcut(mc_par, force_env, lterminate)
    1728             : 
    1729             :       TYPE(mc_simpar_type), INTENT(INOUT)                :: mc_par
    1730             :       TYPE(force_env_type), POINTER                      :: force_env
    1731             :       LOGICAL, INTENT(OUT)                               :: lterminate
    1732             : 
    1733             :       INTEGER                                            :: itype, jtype
    1734             :       REAL(KIND=dp)                                      :: rcutsq_max
    1735             :       REAL(KIND=dp), DIMENSION(1:3)                      :: abc
    1736             :       TYPE(cell_type), POINTER                           :: cell
    1737             :       TYPE(fist_environment_type), POINTER               :: fist_env
    1738             :       TYPE(fist_nonbond_env_type), POINTER               :: fist_nonbond_env
    1739             :       TYPE(pair_potential_pp_type), POINTER              :: potparm
    1740             : 
    1741          14 :       NULLIFY (cell, potparm, fist_nonbond_env, fist_env)
    1742             : 
    1743          14 :       lterminate = .FALSE.
    1744          14 :       CALL force_env_get(force_env, fist_env=fist_env)
    1745             :       CALL fist_env_get(fist_env, cell=cell, &
    1746          14 :                         fist_nonbond_env=fist_nonbond_env)
    1747          14 :       CALL fist_nonbond_env_get(fist_nonbond_env, potparm=potparm)
    1748          14 :       CALL get_cell(cell, abc=abc)
    1749             : 
    1750             : ! find the largest value of rcutsq
    1751          14 :       rcutsq_max = 0.0e0_dp
    1752          50 :       DO itype = 1, SIZE(potparm%pot, 1)
    1753         118 :          DO jtype = itype, SIZE(potparm%pot, 2)
    1754          68 :             IF (potparm%pot(itype, jtype)%pot%rcutsq .GT. rcutsq_max) &
    1755          50 :                rcutsq_max = potparm%pot(itype, jtype)%pot%rcutsq
    1756             :          END DO
    1757             :       END DO
    1758             : 
    1759             : ! check to make sure all box dimensions are greater than two times this
    1760             : ! value
    1761          14 :       mc_par%rcut = rcutsq_max**0.5_dp
    1762          56 :       DO itype = 1, 3
    1763          56 :          IF (abc(itype) .LT. 2.0_dp*mc_par%rcut) THEN
    1764           0 :             lterminate = .TRUE.
    1765             :          END IF
    1766             :       END DO
    1767             : 
    1768          14 :    END SUBROUTINE find_mc_rcut
    1769             : 
    1770             : ! **************************************************************************************************
    1771             : !> \brief figures out the number of total molecules, the number of atoms in each
    1772             : !>      molecule, an array with the molecule types, etc...a lot of information
    1773             : !>      that we need.  I did this because I use multiple force_env (simulation
    1774             : !>      boxes) for MC, and they don't know about each other.
    1775             : !> \param force_env the pointer containing all the force environments in the
    1776             : !>        simulation
    1777             : !> \param mc_molecule_info the structure that will hold all the information
    1778             : !>          for the molecule types
    1779             : !>
    1780             : !>    Suitable for parallel.
    1781             : !> \param box_number ...
    1782             : !> \param coordinates_empty ...
    1783             : !> \author MJM
    1784             : ! **************************************************************************************************
    1785          62 :    SUBROUTINE mc_determine_molecule_info(force_env, mc_molecule_info, box_number, &
    1786             :                                          coordinates_empty)
    1787             : 
    1788             :       TYPE(force_env_p_type), DIMENSION(:), POINTER      :: force_env
    1789             :       TYPE(mc_molecule_info_type), POINTER               :: mc_molecule_info
    1790             :       INTEGER, INTENT(IN), OPTIONAL                      :: box_number
    1791             :       REAL(dp), DIMENSION(:, :), OPTIONAL, POINTER       :: coordinates_empty
    1792             : 
    1793             :       CHARACTER(LEN=default_string_length)               :: name
    1794             :       CHARACTER(LEN=default_string_length), &
    1795          62 :          ALLOCATABLE, DIMENSION(:)                       :: names_init
    1796             :       INTEGER :: first_mol, iatom, ibox, imol, imolecule, itype, iunique, iunit, jtype, last_mol, &
    1797             :          natom, natoms_large, nbend, nbond, nboxes, nmol_types, nmolecule, ntorsion, ntypes, &
    1798             :          skip_box, this_molecule, total
    1799          62 :       INTEGER, DIMENSION(:), POINTER                     :: molecule_list
    1800             :       LOGICAL                                            :: lnew_type
    1801          62 :       TYPE(atom_type), DIMENSION(:), POINTER             :: atom_list
    1802             :       TYPE(atomic_kind_type), POINTER                    :: atomic_kind
    1803             :       TYPE(cp_subsys_type), POINTER                      :: subsys
    1804             :       TYPE(molecule_kind_list_p_type), DIMENSION(:), &
    1805          62 :          POINTER                                         :: molecule_kinds
    1806             :       TYPE(molecule_kind_type), POINTER                  :: molecule_kind
    1807          62 :       TYPE(particle_list_p_type), DIMENSION(:), POINTER  :: particles
    1808             : 
    1809             : ! how many simulation boxes do we have?
    1810             : 
    1811          62 :       nboxes = SIZE(force_env(:))
    1812             : 
    1813             : ! allocate the pointer
    1814           0 :       ALLOCATE (mc_molecule_info)
    1815          62 :       mc_molecule_info%nboxes = nboxes
    1816             : 
    1817             : ! if box_number is present, that box is supposed to be empty,
    1818             : ! so we don't count it in anything
    1819          62 :       IF (PRESENT(box_number)) THEN
    1820          20 :          skip_box = box_number
    1821             :       ELSE
    1822             :          skip_box = 0
    1823             :       END IF
    1824             : 
    1825             : ! we need to figure out how many different kinds of molecules we have...
    1826             : ! the fun stuff comes in when box 1 is missing a molecule type...I'll
    1827             : ! distinguish molecules based on names from the .psf files...
    1828             : ! this is only really a problem when we have more than one simulation
    1829             : ! box
    1830          62 :       NULLIFY (subsys, molecule_kinds, molecule_kind)
    1831             : 
    1832         282 :       ALLOCATE (particles(1:nboxes))
    1833         220 :       ALLOCATE (molecule_kinds(1:nboxes))
    1834             : 
    1835             :       ! find out how many types we have
    1836             :       ntypes = 0
    1837         158 :       DO ibox = 1, nboxes
    1838          96 :          IF (ibox == skip_box) CYCLE
    1839             :          CALL force_env_get(force_env(ibox)%force_env, &
    1840          96 :                             subsys=subsys)
    1841             :          CALL cp_subsys_get(subsys, &
    1842             :                             molecule_kinds=molecule_kinds(ibox)%list, &
    1843          96 :                             particles=particles(ibox)%list)
    1844         158 :          ntypes = ntypes + SIZE(molecule_kinds(ibox)%list%els(:))
    1845             :       END DO
    1846             : 
    1847         186 :       ALLOCATE (names_init(1:ntypes))
    1848             : 
    1849             : ! now get the names of all types so we can figure out how many distinct
    1850             : ! types we have
    1851         158 :       itype = 1
    1852         158 :       natoms_large = 0
    1853         158 :       DO ibox = 1, nboxes
    1854          96 :          IF (ibox == skip_box) CYCLE
    1855         330 :          DO imolecule = 1, SIZE(molecule_kinds(ibox)%list%els(:))
    1856         172 :             molecule_kind => molecule_kinds(ibox)%list%els(imolecule)
    1857             :             CALL get_molecule_kind(molecule_kind, name=names_init(itype), &
    1858         172 :                                    natom=natom)
    1859         172 :             IF (natom .GT. natoms_large) natoms_large = natom
    1860         268 :             itype = itype + 1
    1861             :          END DO
    1862             :       END DO
    1863             : 
    1864             :       nmol_types = 0
    1865         234 :       DO itype = 1, ntypes
    1866             :          lnew_type = .TRUE.
    1867         384 :          DO jtype = 1, itype - 1
    1868         212 :             IF (TRIM(names_init(itype)) .EQ. TRIM(names_init(jtype))) &
    1869         240 :                lnew_type = .FALSE.
    1870             :          END DO
    1871         234 :          IF (lnew_type) THEN
    1872         104 :             nmol_types = nmol_types + 1
    1873             :          ELSE
    1874          68 :             names_init(itype) = ''
    1875             :          END IF
    1876             :       END DO
    1877             : 
    1878             : ! allocate arrays for the names of the molecules, the number of atoms, and
    1879             : ! the conformational probabilities
    1880          62 :       mc_molecule_info%nmol_types = nmol_types
    1881         186 :       ALLOCATE (mc_molecule_info%names(1:nmol_types))
    1882         186 :       ALLOCATE (mc_molecule_info%nunits(1:nmol_types))
    1883         186 :       ALLOCATE (mc_molecule_info%conf_prob(1:3, 1:nmol_types))
    1884         248 :       ALLOCATE (mc_molecule_info%nchains(1:nmol_types, 1:nboxes))
    1885         186 :       ALLOCATE (mc_molecule_info%nunits_tot(1:nboxes))
    1886         248 :       ALLOCATE (mc_molecule_info%atom_names(1:natoms_large, 1:nmol_types))
    1887         248 :       ALLOCATE (mc_molecule_info%mass(1:natoms_large, 1:nmol_types))
    1888             : 
    1889             : ! now record all the information for every molecule type
    1890          62 :       iunique = 0
    1891          62 :       itype = 0
    1892         158 :       DO ibox = 1, nboxes
    1893          96 :          IF (ibox == skip_box) CYCLE
    1894         330 :          DO imolecule = 1, SIZE(molecule_kinds(ibox)%list%els(:))
    1895         172 :             itype = itype + 1
    1896         172 :             IF (names_init(itype) .EQ. '') CYCLE
    1897         104 :             iunique = iunique + 1
    1898         104 :             mc_molecule_info%names(iunique) = names_init(itype)
    1899         104 :             molecule_kind => molecule_kinds(ibox)%list%els(imolecule)
    1900             :             CALL get_molecule_kind(molecule_kind, natom=mc_molecule_info%nunits(iunique), &
    1901         104 :                                    nbond=nbond, nbend=nbend, ntorsion=ntorsion, atom_list=atom_list)
    1902             : 
    1903         320 :             DO iatom = 1, mc_molecule_info%nunits(iunique)
    1904         216 :                atomic_kind => atom_list(iatom)%atomic_kind
    1905             :                CALL get_atomic_kind(atomic_kind=atomic_kind, &
    1906             :                                     name=mc_molecule_info%atom_names(iatom, iunique), &
    1907         320 :                                     mass=mc_molecule_info%mass(iatom, iunique))
    1908             :             END DO
    1909             : 
    1910             : ! compute the probabilities of doing any particular kind of conformation change
    1911         104 :             total = nbond + nbend + ntorsion
    1912             : 
    1913         304 :             IF (total == 0) THEN
    1914         184 :                mc_molecule_info%conf_prob(:, iunique) = 0.0e0_dp
    1915             :             ELSE
    1916          58 :                mc_molecule_info%conf_prob(1, iunique) = REAL(nbond, dp)/REAL(total, dp)
    1917          58 :                mc_molecule_info%conf_prob(2, iunique) = REAL(nbend, dp)/REAL(total, dp)
    1918          58 :                mc_molecule_info%conf_prob(3, iunique) = REAL(ntorsion, dp)/REAL(total, dp)
    1919             :             END IF
    1920             : 
    1921             :          END DO
    1922             :       END DO
    1923             : 
    1924             : ! figure out the empty coordinates
    1925          62 :       IF (PRESENT(coordinates_empty)) THEN
    1926          60 :          ALLOCATE (coordinates_empty(1:3, 1:mc_molecule_info%nunits(1)))
    1927          74 :          DO iunit = 1, mc_molecule_info%nunits(1)
    1928         236 :             coordinates_empty(1:3, iunit) = particles(1)%list%els(iunit)%r(1:3)
    1929             :          END DO
    1930             :       END IF
    1931             : 
    1932             : ! now we need to figure out the total number of molecules of each kind in
    1933             : ! each box, and the total number of interaction sites in each box
    1934         330 :       mc_molecule_info%nchains(:, :) = 0
    1935         166 :       DO iunique = 1, nmol_types
    1936         338 :          DO ibox = 1, nboxes
    1937         172 :             IF (ibox == skip_box) CYCLE
    1938         600 :             DO imolecule = 1, SIZE(molecule_kinds(ibox)%list%els(:))
    1939         324 :                molecule_kind => molecule_kinds(ibox)%list%els(imolecule)
    1940             :                CALL get_molecule_kind(molecule_kind, nmolecule=nmolecule, &
    1941         324 :                                       name=name)
    1942         324 :                IF (TRIM(name) .NE. mc_molecule_info%names(iunique)) CYCLE
    1943         668 :                mc_molecule_info%nchains(iunique, ibox) = mc_molecule_info%nchains(iunique, ibox) + nmolecule
    1944             :             END DO
    1945             :          END DO
    1946             :       END DO
    1947          62 :       mc_molecule_info%nchain_total = 0
    1948         158 :       DO ibox = 1, nboxes
    1949          96 :          mc_molecule_info%nunits_tot(ibox) = 0
    1950          96 :          IF (ibox == skip_box) CYCLE
    1951         268 :          DO iunique = 1, nmol_types
    1952             :             mc_molecule_info%nunits_tot(ibox) = mc_molecule_info%nunits_tot(ibox) + &
    1953         268 :                                                 mc_molecule_info%nunits(iunique)*mc_molecule_info%nchains(iunique, ibox)
    1954             :          END DO
    1955         330 :          mc_molecule_info%nchain_total = mc_molecule_info%nchain_total + SUM(mc_molecule_info%nchains(:, ibox))
    1956             :       END DO
    1957             : 
    1958             : ! now we need to figure out which type every molecule is,
    1959             : ! and which force_env (box) it's in
    1960         186 :       ALLOCATE (mc_molecule_info%mol_type(1:mc_molecule_info%nchain_total))
    1961         186 :       ALLOCATE (mc_molecule_info%in_box(1:mc_molecule_info%nchain_total))
    1962             : 
    1963          62 :       last_mol = 0
    1964         158 :       DO ibox = 1, nboxes
    1965          96 :          IF (ibox == skip_box) CYCLE
    1966          96 :          first_mol = last_mol + 1
    1967         268 :          last_mol = first_mol + SUM(mc_molecule_info%nchains(:, ibox)) - 1
    1968        5404 :          mc_molecule_info%in_box(first_mol:last_mol) = ibox
    1969         330 :          DO imolecule = 1, SIZE(molecule_kinds(ibox)%list%els(:))
    1970         172 :             molecule_kind => molecule_kinds(ibox)%list%els(imolecule)
    1971             :             CALL get_molecule_kind(molecule_kind, nmolecule=nmolecule, &
    1972         172 :                                    name=name, molecule_list=molecule_list)
    1973             : ! figure out which molecule number this is
    1974         172 :             this_molecule = 0
    1975         496 :             DO iunique = 1, nmol_types
    1976         496 :                IF (TRIM(name) .EQ. TRIM(mc_molecule_info%names(iunique))) THEN
    1977         172 :                   this_molecule = iunique
    1978             :                END IF
    1979             :             END DO
    1980        5748 :             DO imol = 1, SIZE(molecule_list(:))
    1981        5480 :                mc_molecule_info%mol_type(first_mol + molecule_list(imol) - 1) = this_molecule
    1982             :             END DO
    1983             :          END DO
    1984             :       END DO
    1985             : 
    1986             : ! get rid of stuff we don't need
    1987          62 :       DEALLOCATE (names_init)
    1988          62 :       DEALLOCATE (molecule_kinds)
    1989          62 :       DEALLOCATE (particles)
    1990             : 
    1991          62 :    END SUBROUTINE MC_DETERMINE_MOLECULE_INFO
    1992             : 
    1993             : ! **************************************************************************************************
    1994             : !> \brief deallocates all the arrays in the mc_molecule_info_type
    1995             : !> \param mc_molecule_info the structure we wish to deallocate
    1996             : !>
    1997             : !>    Suitable for parallel.
    1998             : !> \author MJM
    1999             : ! **************************************************************************************************
    2000          62 :    SUBROUTINE mc_molecule_info_destroy(mc_molecule_info)
    2001             : 
    2002             :       TYPE(mc_molecule_info_type), POINTER               :: mc_molecule_info
    2003             : 
    2004          62 :       DEALLOCATE (mc_molecule_info%nchains)
    2005          62 :       DEALLOCATE (mc_molecule_info%nunits)
    2006          62 :       DEALLOCATE (mc_molecule_info%mol_type)
    2007          62 :       DEALLOCATE (mc_molecule_info%in_box)
    2008          62 :       DEALLOCATE (mc_molecule_info%names)
    2009          62 :       DEALLOCATE (mc_molecule_info%atom_names)
    2010          62 :       DEALLOCATE (mc_molecule_info%conf_prob)
    2011          62 :       DEALLOCATE (mc_molecule_info%nunits_tot)
    2012          62 :       DEALLOCATE (mc_molecule_info%mass)
    2013             : 
    2014          62 :       DEALLOCATE (mc_molecule_info)
    2015             :       NULLIFY (mc_molecule_info)
    2016             : 
    2017          62 :    END SUBROUTINE mc_molecule_info_destroy
    2018             : 
    2019             : ! **************************************************************************************************
    2020             : !> \brief ...
    2021             : !> \param mc_par ...
    2022             : ! **************************************************************************************************
    2023          52 :    SUBROUTINE mc_input_parameters_check(mc_par)
    2024             : 
    2025             : ! **************************************************************************************************
    2026             : !> \brief accesses the private elements of the mc_molecule_info_type
    2027             : !> \param mc_molecule_info the structure you want the parameters for
    2028             : !> \param nmol_types the number of molecule types in the simulation
    2029             : !>
    2030             : !>    Suitable for parallel.
    2031             : !> \author MJM
    2032             :       TYPE(mc_simpar_type), POINTER                      :: mc_par
    2033             : 
    2034             :       INTEGER                                            :: imol_type, nboxes, nchain_total, &
    2035             :                                                             nmol_types
    2036          26 :       INTEGER, DIMENSION(:), POINTER                     :: nunits
    2037             :       LOGICAL                                            :: lhmc
    2038             :       TYPE(mc_molecule_info_type), POINTER               :: mc_molecule_info
    2039             : 
    2040          26 :       CALL get_mc_par(mc_par, mc_molecule_info=mc_molecule_info, lhmc=lhmc)
    2041             : 
    2042             :       CALL get_mc_molecule_info(mc_molecule_info, nmol_types=nmol_types, &
    2043          26 :                                 nboxes=nboxes, nunits=nunits, nchain_total=nchain_total)
    2044             : 
    2045             : ! if we're only doing HMC, we can skip these checks
    2046          26 :       IF (lhmc) RETURN
    2047             : 
    2048             : ! the final value of these arrays needs to be 1.0, otherwise there is
    2049             : ! a chance we won't select a molecule type for a move
    2050          24 :       IF (mc_par%pmavbmc_mol(nmol_types) .LT. 0.9999E0_dp) THEN
    2051           0 :          CPABORT('The last value of PMAVBMC_MOL needs to be 1.0')
    2052             :       END IF
    2053          24 :       IF (mc_par%pmswap_mol(nmol_types) .LT. 0.9999E0_dp) THEN
    2054           0 :          CPABORT('The last value of PMSWAP_MOL needs to be 1.0')
    2055             :       END IF
    2056          24 :       IF (mc_par%pmtraion_mol(nmol_types) .LT. 0.9999E0_dp) THEN
    2057           0 :          CPABORT('The last value of PMTRAION_MOL needs to be 1.0')
    2058             :       END IF
    2059          24 :       IF (mc_par%pmtrans_mol(nmol_types) .LT. 0.9999E0_dp) THEN
    2060           0 :          CPABORT('The last value of PMTRANS_MOL needs to be 1.0')
    2061             :       END IF
    2062          24 :       IF (mc_par%pmrot_mol(nmol_types) .LT. 0.9999E0_dp) THEN
    2063           0 :          CPABORT('The last value of PMROT_MOL needs to be 1.0')
    2064             :       END IF
    2065             : 
    2066             : ! check to make sure we have all the desired values for various
    2067             : 
    2068             :       ! some ensembles require multiple boxes or molecule types
    2069          28 :       SELECT CASE (mc_par%ensemble)
    2070             :       CASE ("GEMC_NPT")
    2071           4 :          IF (nmol_types .LE. 1) &
    2072           0 :             CPABORT('Cannot have GEMC-NPT simulation with only one molecule type')
    2073           4 :          IF (nboxes .LE. 1) &
    2074           0 :             CPABORT('Cannot have GEMC-NPT simulation with only one box')
    2075             :       CASE ("GEMC_NVT")
    2076           8 :          IF (nboxes .LE. 1) &
    2077           0 :             CPABORT('Cannot have GEMC-NVT simulation with only one box')
    2078             :       CASE ("TRADITIONAL")
    2079          10 :          IF (mc_par%pmswap .GT. 0.0E0_dp) &
    2080           0 :             CPABORT('You cannot do swap moves in a system with only one box')
    2081             :       CASE ("VIRIAL")
    2082           2 :          IF (nchain_total .NE. 2) &
    2083          24 :             CPABORT('You need exactly two molecules in the box to compute the second virial.')
    2084             :       END SELECT
    2085             : 
    2086             : ! can't choose an AVBMC target atom number higher than the number
    2087             : ! of units in that molecule
    2088          64 :       DO imol_type = 1, nmol_types
    2089          64 :          IF (mc_par%avbmc_atom(imol_type) .GT. nunits(imol_type)) THEN
    2090           0 :             CPABORT('Cannot have avbmc_atom higher than the number of atoms for that molecule type!')
    2091             :          END IF
    2092             :       END DO
    2093             : 
    2094          26 :    END SUBROUTINE mc_input_parameters_check
    2095             : 
    2096           0 : END MODULE mc_types
    2097             : 

Generated by: LCOV version 1.15