Line data Source code
1 : !--------------------------------------------------------------------------------------------------!
2 : ! CP2K: A general program to perform molecular dynamics simulations !
3 : ! Copyright 2000-2025 CP2K developers group <https://cp2k.org> !
4 : ! !
5 : ! SPDX-License-Identifier: GPL-2.0-or-later !
6 : !--------------------------------------------------------------------------------------------------!
7 :
8 218882 : PROGRAM nequip_unittest
9 :
10 2 : USE cp_files, ONLY: discover_file
11 : USE kinds, ONLY: default_path_length,&
12 : dp,&
13 : int_8,&
14 : sp
15 : USE mathlib, ONLY: inv_3x3
16 : USE physcon, ONLY: angstrom,&
17 : evolt
18 : USE torch_api, ONLY: &
19 : torch_cuda_is_available, torch_dict_create, torch_dict_get, torch_dict_insert, &
20 : torch_dict_release, torch_dict_type, torch_model_forward, torch_model_load, &
21 : torch_model_read_metadata, torch_model_release, torch_model_type, torch_tensor_data_ptr, &
22 : torch_tensor_from_array, torch_tensor_release, torch_tensor_type
23 : #include "./base/base_uses.f90"
24 :
25 : IMPLICIT NONE
26 :
27 : CHARACTER(LEN=default_path_length) :: filename, cutoff_str, nequip_version
28 : REAL(dp) :: cutoff
29 :
30 : ! Inputs.
31 : INTEGER, PARAMETER :: natoms = 96
32 : INTEGER :: iatom, nedges
33 2 : REAL(sp), DIMENSION(:, :), ALLOCATABLE :: pos, cell
34 : REAL(dp), DIMENSION(3, 3) :: hinv
35 2 : INTEGER(kind=int_8), DIMENSION(:), ALLOCATABLE :: atom_types
36 2 : INTEGER(kind=int_8), DIMENSION(:, :), ALLOCATABLE :: edge_index
37 2 : REAL(sp), DIMENSION(:, :), ALLOCATABLE:: edge_cell_shift
38 :
39 : ! Torch objects.
40 : TYPE(torch_model_type) :: model
41 : TYPE(torch_dict_type) :: inputs, outputs
42 : TYPE(torch_tensor_type) :: pos_tensor, edge_index_tensor, edge_cell_shift_tensor, cell_tensor, &
43 : atom_types_tensor, total_energy_tensor, atomic_energy_tensor, forces_tensor
44 :
45 : ! Outputs.
46 2 : REAL(sp), DIMENSION(:, :), POINTER :: total_energy, atomic_energy, forces
47 2 : NULLIFY (total_energy, atomic_energy, forces)
48 :
49 : ! A box with 32 water molecules.
50 2 : ALLOCATE (pos(3, natoms))
51 : pos(:, :) = RESHAPE(REAL([ &
52 : 42.8861696_dp, -0.0556816_dp, 38.3291611_dp, &
53 : 34.2025887_dp, -0.6185484_dp, 37.3655680_dp, &
54 : 30.0803925_dp, -2.0124176_dp, 36.4807960_dp, &
55 : 28.7057911_dp, -2.6880392_dp, 36.6020983_dp, &
56 : 36.2479426_dp, -0.5163484_dp, 34.4923596_dp, &
57 : 37.6964724_dp, -0.0410872_dp, 35.0140735_dp, &
58 : 27.7606699_dp, 7.4854206_dp, 33.9276919_dp, &
59 : 28.8160999_dp, 6.4985777_dp, 34.2163608_dp, &
60 : 37.1576372_dp, 9.0188280_dp, 31.9265812_dp, &
61 : 38.6063816_dp, 9.5820079_dp, 32.3435972_dp, &
62 : 34.3031959_dp, 2.2195014_dp, 45.9880451_dp, &
63 : 33.2444139_dp, 1.3025332_dp, 46.4698427_dp, &
64 : 38.7286174_dp, -5.0541897_dp, 26.0743968_dp, &
65 : 38.3483921_dp, -6.2832846_dp, 26.9867253_dp, &
66 : 32.8642520_dp, 3.2060632_dp, 30.8971160_dp, &
67 : 31.2904088_dp, 3.0871834_dp, 30.6273977_dp, &
68 : 33.7519869_dp, -3.1383262_dp, 39.6727607_dp, &
69 : 34.6642979_dp, -3.6643859_dp, 38.6466027_dp, &
70 : 42.7173214_dp, 5.1246883_dp, 32.5883401_dp, &
71 : 41.5627455_dp, 5.5893544_dp, 33.4174902_dp, &
72 : 32.4283800_dp, 9.1182520_dp, 30.5477678_dp, &
73 : 32.6432407_dp, 10.770683_dp, 30.4842778_dp, &
74 : 31.4848670_dp, 4.6777144_dp, 37.3957194_dp, &
75 : 32.3171882_dp, -6.2287496_dp, 36.4671864_dp, &
76 : 26.6621340_dp, 3.1708123_dp, 35.6820146_dp, &
77 : 26.5271367_dp, 1.6039040_dp, 35.4883482_dp, &
78 : 32.0238236_dp, 16.918208_dp, 31.6883569_dp, &
79 : 31.4006579_dp, 7.0315610_dp, 30.2394554_dp, &
80 : 33.5264253_dp, -3.5594808_dp, 34.2636830_dp, &
81 : 34.6404855_dp, -3.2653833_dp, 35.4971482_dp, &
82 : 40.0564375_dp, -0.3054386_dp, 29.8312074_dp, &
83 : 39.4784464_dp, -1.0948314_dp, 38.3101140_dp, &
84 : 39.7040761_dp, 1.9584631_dp, 33.3902375_dp, &
85 : 38.3338570_dp, 2.6967178_dp, 42.9261945_dp, &
86 : 40.1820455_dp, -7.2199289_dp, 27.6580390_dp, &
87 : 39.3204431_dp, -8.4564252_dp, 28.1319658_dp, &
88 : 36.3876963_dp, 8.8117085_dp, 38.3545362_dp, &
89 : 36.3205637_dp, 9.0063075_dp, 36.7526001_dp, &
90 : 29.9991583_dp, -5.5637817_dp, 33.9295050_dp, &
91 : 30.7728545_dp, -5.0385870_dp, 35.1998067_dp, &
92 : 40.0592517_dp, 6.3305279_dp, 28.2579461_dp, &
93 : 40.2398360_dp, 5.1745923_dp, 29.2962956_dp, &
94 : 26.3320911_dp, 2.4393638_dp, 33.5653868_dp, &
95 : 26.9606971_dp, 1.2711078_dp, 32.5923884_dp, &
96 : 34.8372697_dp, -0.4722708_dp, 30.3824362_dp, &
97 : 35.3968813_dp, -1.9268483_dp, 30.3081837_dp, &
98 : 32.1217607_dp, -0.7333429_dp, 36.5104382_dp, &
99 : 32.2180843_dp, 7.8454304_dp, 35.6671967_dp, &
100 : 36.3780998_dp, -4.3048878_dp, 36.4539793_dp, &
101 : 35.8119275_dp, -3.0013928_dp, 27.0348937_dp, &
102 : 29.6452491_dp, 1.0652123_dp, 35.7143653_dp, &
103 : 30.3794654_dp, -0.0668146_dp, 34.9882468_dp, &
104 : 34.2149336_dp, -1.6559120_dp, 33.8876437_dp, &
105 : 34.7842435_dp, -1.0252141_dp, 32.5034832_dp, &
106 : 40.4649954_dp, 1.1467825_dp, 31.3073503_dp, &
107 : 41.3262469_dp, 0.6550803_dp, 32.4555882_dp, &
108 : 29.0210859_dp, 3.5038194_dp, 39.9087702_dp, &
109 : 29.4945426_dp, 3.7276637_dp, 41.3766138_dp, &
110 : 34.1359664_dp, -6.7533422_dp, 32.3568410_dp, &
111 : 34.9546570_dp, -5.7704242_dp, 31.4571066_dp, &
112 : 33.2532356_dp, 1.5268048_dp, 44.0562171_dp, &
113 : 33.7931669_dp, 0.5014632_dp, 43.0597590_dp, &
114 : 36.8205409_dp, 2.6214681_dp, 40.6834006_dp, &
115 : 37.5552706_dp, 1.5649832_dp, 39.7648935_dp, &
116 : 43.2099087_dp, -0.0628456_dp, 47.2593155_dp, &
117 : 29.3940583_dp, -2.3133019_dp, 37.1407883_dp, &
118 : 36.7415708_dp, -0.0838710_dp, 35.2591783_dp, &
119 : 27.9424776_dp, 6.7622961_dp, 34.5648384_dp, &
120 : 37.6812656_dp, 9.4216399_dp, 32.6478643_dp, &
121 : 33.3171290_dp, 2.0951401_dp, 45.8722265_dp, &
122 : 37.9951355_dp, 4.3611431_dp, 26.5571819_dp, &
123 : 32.1824670_dp, 2.6611503_dp, 30.4577248_dp, &
124 : 34.6538012_dp, -3.4374573_dp, 39.5889245_dp, &
125 : 42.2929833_dp, 5.9471069_dp, 32.8460995_dp, &
126 : 32.9604690_dp, 9.9050313_dp, 30.1587306_dp, &
127 : 31.4281886_dp, -5.8338304_dp, 36.6738743_dp, &
128 : 26.0563730_dp, 2.4973869_dp, 35.3486870_dp, &
129 : 32.0334927_dp, 17.3252289_dp, 30.8116013_dp, &
130 : 33.8252182_dp, -2.9520949_dp, 35.0220460_dp, &
131 : 39.4569981_dp, -0.3072759_dp, 38.9347829_dp, &
132 : 29.4846708_dp, 2.8692561_dp, 43.0061868_dp, &
133 : 39.2864184_dp, -7.6206103_dp, 27.6271147_dp, &
134 : 35.8797502_dp, 8.6515870_dp, 37.5221734_dp, &
135 : 30.3582543_dp, -4.7607656_dp, 34.3355645_dp, &
136 : 40.7098956_dp, 5.8331250_dp, 28.7558375_dp, &
137 : 26.7179083_dp, 2.2415138_dp, 32.6577297_dp, &
138 : 35.6589256_dp, -0.9968903_dp, 30.5749530_dp, &
139 : 31.5851602_dp, -1.3121804_dp, 35.9011109_dp, &
140 : 35.5489386_dp, -3.9056138_dp, 26.8214490_dp, &
141 : 29.5656616_dp, 0.4681794_dp, 34.9670711_dp, &
142 : 34.7615128_dp, -0.9569680_dp, 33.4891367_dp, &
143 : 40.4853406_dp, 0.4023620_dp, 31.9425416_dp, &
144 : 29.6728289_dp, 4.0134825_dp, 40.4505780_dp, &
145 : 34.1272286_dp, -5.8796882_dp, 31.8925999_dp, &
146 : 33.1168884_dp, 1.2338084_dp, 43.1127997_dp, &
147 770 : 37.1996993_dp, 2.5049007_dp, 39.7917126_dp], kind=sp), shape=[3, natoms])
148 :
149 2 : ALLOCATE (cell(3, 3))
150 8 : cell(1, :) = [9.85_sp, 0.0_sp, 0.0_sp]
151 8 : cell(2, :) = [0.0_sp, 9.85_sp, 0.0_sp]
152 8 : cell(3, :) = [0.0_sp, 0.0_sp, 9.85_sp]
153 :
154 26 : hinv(:, :) = inv_3x3(REAL(cell, kind=dp))
155 :
156 2 : ALLOCATE (atom_types(natoms))
157 130 : atom_types(:64) = 0 ! Hydrogen
158 66 : atom_types(65:) = 1 ! Oxygen
159 :
160 2 : WRITE (*, *) "CUDA is available: ", torch_cuda_is_available()
161 :
162 2 : filename = discover_file('NequIP/water-deployed-neq060sp.pth')
163 2 : WRITE (*, *) "Loading NequIP model from: "//TRIM(filename)
164 2 : CALL torch_model_load(model, filename)
165 2 : cutoff_str = torch_model_read_metadata(filename, "r_max")
166 2 : nequip_version = torch_model_read_metadata(filename, "nequip_version")
167 2 : READ (cutoff_str, *) cutoff
168 2 : WRITE (*, *) "Version: ", TRIM(nequip_version)
169 2 : WRITE (*, *) "Cutoff: ", cutoff
170 :
171 2 : CALL neighbor_search(nedges)
172 6 : ALLOCATE (edge_index(nedges, 2))
173 6 : ALLOCATE (edge_cell_shift(3, nedges))
174 2 : CALL neighbor_search(nedges, edge_index, edge_cell_shift)
175 2 : WRITE (*, *) "Found", nedges, "neighbor edges between", natoms, "atoms."
176 :
177 2 : CALL torch_dict_create(inputs)
178 2 : CALL torch_dict_create(outputs)
179 :
180 2 : CALL torch_tensor_from_array(pos_tensor, pos)
181 2 : CALL torch_dict_insert(inputs, "pos", pos_tensor)
182 2 : CALL torch_tensor_release(pos_tensor)
183 :
184 2 : CALL torch_tensor_from_array(edge_index_tensor, edge_index)
185 2 : CALL torch_dict_insert(inputs, "edge_index", edge_index_tensor)
186 2 : CALL torch_tensor_release(edge_index_tensor)
187 :
188 2 : CALL torch_tensor_from_array(edge_cell_shift_tensor, edge_cell_shift)
189 2 : CALL torch_dict_insert(inputs, "edge_cell_shift", edge_cell_shift_tensor)
190 2 : CALL torch_tensor_release(edge_cell_shift_tensor)
191 :
192 2 : CALL torch_tensor_from_array(cell_tensor, cell)
193 2 : CALL torch_dict_insert(inputs, "cell", cell_tensor)
194 2 : CALL torch_tensor_release(cell_tensor)
195 :
196 2 : CALL torch_tensor_from_array(atom_types_tensor, atom_types)
197 2 : CALL torch_dict_insert(inputs, "atom_types", atom_types_tensor)
198 2 : CALL torch_tensor_release(atom_types_tensor)
199 :
200 2 : CALL torch_model_forward(model, inputs, outputs)
201 :
202 2 : CALL torch_dict_get(outputs, "total_energy", total_energy_tensor)
203 2 : CALL torch_tensor_data_ptr(total_energy_tensor, total_energy)
204 :
205 2 : CALL torch_dict_get(outputs, "atomic_energy", atomic_energy_tensor)
206 2 : CALL torch_tensor_data_ptr(atomic_energy_tensor, atomic_energy)
207 :
208 2 : CALL torch_dict_get(outputs, "forces", forces_tensor)
209 2 : CALL torch_tensor_data_ptr(forces_tensor, forces)
210 :
211 2 : WRITE (*, *) "Total Energy [Hartree] : ", total_energy(1, 1)/evolt
212 2 : WRITE (*, *) "FORCES: [Hartree/Bohr]: "
213 194 : DO iatom = 1, natoms
214 770 : WRITE (*, *) forces(:, iatom)*angstrom/evolt
215 : END DO
216 2 : CPASSERT(ABS(-14985.4443_dp - REAL(total_energy(1, 1), kind=dp)) < 2e-3_dp)
217 :
218 2 : CALL torch_tensor_release(total_energy_tensor)
219 2 : CALL torch_tensor_release(atomic_energy_tensor)
220 2 : CALL torch_tensor_release(forces_tensor)
221 2 : CALL torch_dict_release(inputs)
222 2 : CALL torch_dict_release(outputs)
223 2 : CALL torch_model_release(model)
224 2 : DEALLOCATE (edge_index, edge_cell_shift, pos, cell, atom_types)
225 :
226 8 : WRITE (*, *) "NequIP unittest was successfully :-)"
227 :
228 : CONTAINS
229 :
230 : ! **************************************************************************************************
231 : !> \brief Naive neighbor search - beware it scales O(N**2).
232 : !> \param nedges ...
233 : !> \param edge_index ...
234 : !> \param edge_cell_shift ...
235 : ! **************************************************************************************************
236 4 : SUBROUTINE neighbor_search(nedges, edge_index, edge_cell_shift)
237 : INTEGER, INTENT(OUT) :: nedges
238 : INTEGER(kind=int_8), DIMENSION(:, :), &
239 : INTENT(OUT), OPTIONAL :: edge_index
240 : REAL(sp), DIMENSION(:, :), INTENT(OUT), OPTIONAL :: edge_cell_shift
241 :
242 : INTEGER:: iatom, jatom
243 : REAL(dp), DIMENSION(3) :: s1, s2, s12, cell_shift, dx
244 :
245 4 : nedges = 0
246 388 : DO iatom = 1, natoms
247 37252 : DO jatom = 1, natoms
248 36864 : IF (iatom == jatom) CYCLE
249 583680 : s1 = MATMUL(hinv, pos(:, iatom))
250 583680 : s2 = MATMUL(hinv, pos(:, jatom))
251 145920 : s12 = s1 - s2
252 145920 : cell_shift = ANINT(s12)
253 1422720 : dx = MATMUL(cell, s12 - cell_shift)
254 146304 : IF (DOT_PRODUCT(dx, dx) <= cutoff**2) THEN
255 10736 : nedges = nedges + 1
256 10736 : IF (PRESENT(edge_index)) THEN
257 16104 : edge_index(nedges, :) = [iatom - 1, jatom - 1]
258 : END IF
259 10736 : IF (PRESENT(edge_cell_shift)) THEN
260 21472 : edge_cell_shift(:, nedges) = REAL(cell_shift, kind=sp)
261 : END IF
262 : END IF
263 : END DO
264 : END DO
265 4 : END SUBROUTINE neighbor_search
266 :
267 : END PROGRAM nequip_unittest
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